| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,516,467 – 22,516,551 |
| Length | 84 |
| Max. P | 0.574282 |
| Location | 22,516,467 – 22,516,551 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 60.94 |
| Shannon entropy | 0.56285 |
| G+C content | 0.60089 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -15.12 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22516467 84 + 23011544 CCGAGUCGAGGCGGUACAAACCUCCAUCCGUAAAAGCC-AGGGGGAAUCCGUGGCCUACGCGGGAACCCCCUUUCUAAGGCUGGU- ((.((((..((.(((....))).)).........((..-((((((..((((((.....))))))..))))))..))..)))))).- ( -33.00, z-score = -1.11, R) >dp4.Unknown_group_286 28775 84 + 32412 CCGAAAAGGGGCGGUAUAUCCCUCACCGACCAGAAGCC-AAGGGAAACCUGUGGCCAGCGCGGGAUCCCCUAUCGCCUGACUGGU- .((...(((((.......)))))...))(((((..(((-((((....))).))))(((.((((.........))))))).)))))- ( -31.10, z-score = -0.78, R) >droVir3.scaffold_12734 498670 85 - 510240 CCGAUUCGGAGCGCUAUAGCUCCCAGCGGUCAAAAGCCUGAGGGAAACUUCUGGCCACCGAGGGACUUCC-AUGUUGAGCCCUGUU (((....(((((......)))))...)))......(((.((((....)))).))).....((((.(((..-.....)))))))... ( -31.30, z-score = -1.48, R) >consensus CCGAAUCGGGGCGGUAUAACCCUCAACGACCAAAAGCC_AAGGGAAACCUGUGGCCAACGCGGGAACCCC_AUCCUAAGACUGGU_ .......((((.........))))................(((((..((((((.....))))))..)))))............... (-15.12 = -14.47 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:27 2011