| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,515,937 – 22,515,990 |
| Length | 53 |
| Max. P | 0.918299 |
| Location | 22,515,937 – 22,515,990 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 66.09 |
| Shannon entropy | 0.54188 |
| G+C content | 0.37133 |
| Mean single sequence MFE | -7.62 |
| Consensus MFE | -5.76 |
| Energy contribution | -4.45 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22515937 53 + 23011544 AGCGAAUGGCAA-CAGCCGAUCCUCAAAAGCAGUUAACGUUUUCAAAAAAUAGC----- .((((.((((..-..)))).))....(((((.......))))).........))----- ( -7.10, z-score = -0.20, R) >droEre2.scaffold_4784 13741839 59 - 25762168 AAUAAACGGCAGUCAGUCGAUCGAAAGGGGAAAUUAAAUCUUACACACAUUAAAAACAC ......((((.....)))).((....))............................... ( -5.60, z-score = -1.13, R) >droSec1.super_42 118983 56 + 298440 AACGAAUGGCAAACUGCCGAUCCUUAAAAGCUUUAAACGUUUAAGUAAAAUAGCAC--- ...((.((((.....)))).)).......(((....((......)).....)))..--- ( -8.90, z-score = -1.10, R) >droSim1.chr2h_random 31416 56 - 3178526 AACGAAUGGCAAACUGCCGAUCCUUAAAAGCUUUAAACGUUUAAGUAAAAUAGCAC--- ...((.((((.....)))).)).......(((....((......)).....)))..--- ( -8.90, z-score = -1.10, R) >consensus AACGAAUGGCAAACAGCCGAUCCUUAAAAGCAUUAAACGUUUAAAUAAAAUAGCAC___ ......((((.....))))........((((.......))))................. ( -5.76 = -4.45 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:27 2011