| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,508,205 – 22,508,298 |
| Length | 93 |
| Max. P | 0.657030 |
| Location | 22,508,205 – 22,508,298 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 64.82 |
| Shannon entropy | 0.48412 |
| G+C content | 0.62533 |
| Mean single sequence MFE | -38.10 |
| Consensus MFE | -29.20 |
| Energy contribution | -27.43 |
| Covariance contribution | -1.77 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22508205 93 + 23011544 --------CUCUCACCGUGCUGGUGCCU----AAGCAGAGGCUCUGGUGUCCGAGUCGAGGCGGUACAAACCUCCAUCCGUAAAAGCCAGGGGGAAUCCGUGGCC --------(((.(((((.(((..(((..----..)))..)))..)))))...)))....((.(((....))).))..........((((.((.....)).)))). ( -30.30, z-score = 0.41, R) >dp4.Unknown_group_286 28725 105 + 32412 CCCGCCUUUCCCCGCCUAGGCGGUGUCCCGGAAAAUAGGGGCUCUGGGGACCGAAAAGGGGCGGUAUAUCCCUCACCGACCAGAAGCCAAGGGAAACCUGUGGCC .(((((..(((((((....))((.(((((........))))).)))))))((.....))))))).....................(((((((....))).)))). ( -46.10, z-score = -0.91, R) >droPer1.super_11490 418 88 - 901 ----------------UAGGCGGUGUCCCGGAAAA-AGGGGCUCUGGGGACCGAGAAGGGGCGGUAUAUCCCCCAUCGACCAGAAGCCAAGGGAAACCUGUGGCC ----------------..(((((((((((......-.)))))(((((....(((....(((.((.....))))).))).))))).))).(((....)))...))) ( -37.90, z-score = -1.33, R) >consensus __________C_C_CCUAGGCGGUGUCCCGGAAAA_AGGGGCUCUGGGGACCGAGAAGGGGCGGUAUAUCCCUCAACGACCAGAAGCCAAGGGAAACCUGUGGCC ..................((.((.(((((........))))).))(((.((((........))))....))).......))....(((((((....))).)))). (-29.20 = -27.43 + -1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:26 2011