| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,490,227 – 22,490,347 |
| Length | 120 |
| Max. P | 0.809742 |
| Location | 22,490,227 – 22,490,347 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 60.42 |
| Shannon entropy | 0.66461 |
| G+C content | 0.49635 |
| Mean single sequence MFE | -35.29 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.20 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22490227 120 + 23011544 AUGGGUCUGACUACCAUGAGGUACAGCCAUCUUAUUAUGCGUGGUGAGGUUCCCCACGACUUACCAGCAAUGUUUCUACACGUGAAAAGUGCUCUGGUGCACUUAUCAAUUUUGUUAUCG ...((.(((..((((....))))))))).........(((.(((((((...........))))))))))........(((..(((.((((((......)))))).)))....)))..... ( -31.30, z-score = -0.58, R) >droPer1.super_278 18291 120 + 27293 GUUGGUCGCACCACCGAGAUGUAGAUCCAGUGCAUUAGAGCAGGUGACAGGCCCCAUGUGCUGCUGAGCAUCUUCUUGGAUGCAUAAAGCGCAAUGGUAGCCUUCUUCACCCCUUCAACU .(((((......)))))((((((.......)))))).(((..(((((.((((.(((((((((..((.((((((....)))))).)).))))).))))..))))...)))))..))).... ( -40.00, z-score = -1.43, R) >dp4.Unknown_group_60 16962 120 - 24094 GUUGGUCGCGCCACCGAUAUGUAGAUCAAGUGCAUUAGAGCAGGUGACAGGCCCCAUGUGCUACUGAGCAUCUUCUUGGAUGCAUAAAGCGCAAUGGUGGCCUUCUUAAUCCUUUCCACU ..(((....(.(((((((......)))...(((......))))))).)((((((((((((((.....((((((....))))))....))))).)))).)))))............))).. ( -39.40, z-score = -1.45, R) >droYak2.chrX_random 1069906 96 - 1802292 GUUGGACGCUCCACCGAGAUGUAAACCCAGUGCAUUAGAGCGGGUGAGAGUCCCCAUGUGCUGCUAAGCAUCUUCUUC--UUUUUCACCCUCUCUAGU---------------------- .((((((((((....))).)))....))))...(((((((.(((((((((.......(((((....))))).......--.))))))))).)))))))---------------------- ( -30.46, z-score = -2.44, R) >consensus GUUGGUCGCACCACCGAGAUGUAGAUCCAGUGCAUUAGAGCAGGUGACAGGCCCCAUGUGCUACUAAGCAUCUUCUUGGAUGCAUAAAGCGCAAUGGUGGCCUUCUUAAUCCUUUCAACU ...(((...)))((((..................((((((((.(((........))).)))).))))((((((....))))))...........))))...................... (-13.51 = -13.20 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:25 2011