| Sequence ID | dm3.chr2L |
|---|---|
| Location | 224,212 – 224,311 |
| Length | 99 |
| Max. P | 0.967041 |
| Location | 224,212 – 224,311 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 86.34 |
| Shannon entropy | 0.23711 |
| G+C content | 0.40449 |
| Mean single sequence MFE | -20.26 |
| Consensus MFE | -15.91 |
| Energy contribution | -16.88 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 224212 99 + 23011544 AUAAAUCCAGAAAAUGUAAAAUUACAAACACA-----CAUUGCAGACAUCUAGGGAGCGGGACAGAGAUAGAGAGUGAGG-CACUCUCGCAUGGAAAACUAAUAC-- .....((((.....((((....))))......-----...(((....((((..(........)..)))).(((((((...-))))))))))))))..........-- ( -20.90, z-score = -2.69, R) >droSim1.chr2L 228305 99 + 22036055 AUAAAUCCAGAAAAUGUAAAAUUACAAACACA-----CAUUGCAGACAUCUAGGGAGCGGGACAGAGAUAGAGAGUGAGG-CACUCUCGCAUGGAAAACUAAUAC-- .....((((.....((((....))))......-----...(((....((((..(........)..)))).(((((((...-))))))))))))))..........-- ( -20.90, z-score = -2.69, R) >droSec1.super_14 222075 100 + 2068291 AUAAAUCCAGAAAAUGUAAAAUUACAAACACA-----CAUUGCAGACAUCUAGGGAGCGGGACAGAGAUAGAGAGUGGCCUCACUCUCGCAUGGAAAACUAAUAC-- .....((((.....((((....))))......-----...(((....((((..(........)..)))).(((((((....))))))))))))))..........-- ( -22.20, z-score = -2.38, R) >droYak2.chr2L 217063 106 + 22324452 AUAAAUCUAGAAAAUGUAAAAUUACAAACACAACACACAUUGCAGACAUCUAGGGAGCGGGACAGAGAUAGAGAGUGAGG-CACUCUCGCAUGGAAAACUAAUACAU .....((((.....((((....))))..............(((....((((..(........)..)))).(((((((...-))))))))))))))............ ( -18.60, z-score = -1.91, R) >droAna3.scaffold_12943 872991 91 - 5039921 AUAAAUCCAGAAAAUGUAAAAUUACAAACACA-----CAUUGC-----UCGGGGGACAGAGACAGCGC----GAUUGGAGAGCUACUCGCAUGGAAAACUAAUAC-- .....((((.....((((....))))......-----..((((-----((.(....).))).))).((----((.(((....))).)))).))))..........-- ( -18.70, z-score = -2.43, R) >consensus AUAAAUCCAGAAAAUGUAAAAUUACAAACACA_____CAUUGCAGACAUCUAGGGAGCGGGACAGAGAUAGAGAGUGAGG_CACUCUCGCAUGGAAAACUAAUAC__ .....((((.....((((....))))..............(((....((((..(........)..)))).(((((((....))))))))))))))............ (-15.91 = -16.88 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:16 2011