| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,453,178 – 22,453,238 |
| Length | 60 |
| Max. P | 0.982503 |
| Location | 22,453,178 – 22,453,238 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 49.05 |
| Shannon entropy | 0.82368 |
| G+C content | 0.45952 |
| Mean single sequence MFE | -10.88 |
| Consensus MFE | -5.35 |
| Energy contribution | -9.22 |
| Covariance contribution | 3.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22453178 60 - 23011544 ----AUAUGCCGCUCCCCUGCAUCUAGAUUUGUGUUGAGUUUUAAGACUCCUCACAACACGUUU ----.......((......))........(((((..(((((....)))))..)))))....... ( -12.30, z-score = -2.39, R) >droPer1.super_176 67055 60 - 67533 AUUCUCACGUCACCUAACGACUCCGAGAUUCUUUUGGA-CAAAAUUUGUAUAUAUAAAUCG--- ........(((.......)))(((((((...)))))))-....((((((....))))))..--- ( -6.00, z-score = 0.11, R) >droEre2.scaffold_4845 21240769 56 + 22589142 ----CAAGGACGCUCCCCUGCACCCUGAUUUGUGGGGAGUCUUACGACUCCACACAUCUC---- ----..(((..((......))..)))((..((((.((((((....)))))).))))..))---- ( -20.00, z-score = -2.92, R) >droSim1.chrU 10222326 60 + 15797150 ----CAACUCAGCUCUCCUGCAUGCGGAUUAUUGGGCCGUUUUAUAACUCCUCACACAACACAC ----...(.((((......)).)).)......((((..(((....)))..)))).......... ( -5.20, z-score = 1.01, R) >consensus ____CAACGCCGCUCCCCUGCACCCAGAUUUGUGGGGAGUUUUAUGACUCCACACAAAACG___ ..........................(((((((((((((((....))))))))))))))).... ( -5.35 = -9.22 + 3.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:13 2011