| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,415,346 – 22,415,461 |
| Length | 115 |
| Max. P | 0.663154 |
| Location | 22,415,346 – 22,415,461 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 91.30 |
| Shannon entropy | 0.11978 |
| G+C content | 0.37790 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.31 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22415346 115 + 23011544 CCACGCUGUUGCGAGGUAAAAAAUGCGUGUUCUAAGAAUAUGCAAAACGAAAGAAGUGGACACAAAGUAACAGAAAUGGGUCGUUAUACUUGAAAUUUAAAAUAAAUCUGCGACA (((..(((((((...((......(((((((((...)))))))))...(....)........))...)))))))...)))(((((.........................))))). ( -28.51, z-score = -2.82, R) >droSec1.super_18 99579 114 + 1342155 CCACGCUGUUGCGAGGUAGAGAAUCCGUGUUCUAAGAAUAUGCAAAACGAAAGAAGUGGACACAAA-UAACAGAAAACGGUCGUUAUACUUGAAAUUAAAAAUAAAUCUGCGACA ((((....((((..((........))((((((...))))))))))..(....)..)))).......-............(((((.........................))))). ( -18.71, z-score = 0.18, R) >droYak2.chr2h_random 921766 115 - 3774259 CCACGCUGUUGCGAAGUAGAAAAUGCGUGUUCUAAGAACAUGCAAAACGAAAGAGGCGAACACAAAGUAGCAGAAAACGGUCGUUAUAUUUGAAAUUAAAAGUAAAUCUGCGACA .....(((((((...........(((((((((...)))))))))...(....).............)))))))......(((((..(((((........))))).....))))). ( -28.20, z-score = -2.04, R) >consensus CCACGCUGUUGCGAGGUAGAAAAUGCGUGUUCUAAGAAUAUGCAAAACGAAAGAAGUGGACACAAAGUAACAGAAAACGGUCGUUAUACUUGAAAUUAAAAAUAAAUCUGCGACA .....(((((((...((......(((((((((...)))))))))...(....)........))...)))))))......(((((.........................))))). (-22.08 = -22.31 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:07 2011