| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,406,996 – 22,407,112 |
| Length | 116 |
| Max. P | 0.627778 |
| Location | 22,406,996 – 22,407,112 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 53.44 |
| Shannon entropy | 0.82840 |
| G+C content | 0.60030 |
| Mean single sequence MFE | -40.56 |
| Consensus MFE | -11.62 |
| Energy contribution | -15.58 |
| Covariance contribution | 3.96 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22406996 116 - 23011544 GCCGGCCGGAACGGGUUUGGGAUGUU--AUGGUGC-AGGGUGUAUCGUCCACGGG-CGAGGCAACGCUCGGCCUGGGACCAC-CUUGGCUGGCCACUGACUCCACUGACCCUUAC-CACACG .......((...(((((..(((.(((--(((((((-((((((....((((.((((-((((......))).))))))))))))-))).))..)))).)))))))...)))))...)-)..... ( -47.70, z-score = -0.47, R) >droSim1.chrU 7001226 97 - 15797150 --------------------GGUGUU--AUGGUGCAAGGGUGUAUCGUCCUUGGG-CGAGGUAACGCUCGUCCUGGGACCAC-CUUUGCUGGCCACUGACUCCAAUGAUCCUUAC-GACACG --------------------((.(((--((((((((((((((....(((((.(((-((((......))))))).))))))))-))))))..)))).)))).))............-...... ( -43.90, z-score = -3.96, R) >droSec1.super_41 115602 115 - 296808 ---GGCCCGAACGGGUUUAGGAUAAU--UUGGUGC-AGGGUGUAUCGUCCACAGGUUGAGGCAACGCUCAGCCUGGGACCAC-CUUUGCCGACCACUAACUCCACUGACCCUUUUAGACACG ---...(..((.(((((..(((....--.((((((-((((((....((((.(((((((((......))))))))))))))))-).))))..)))).....)))...))))).))..)..... ( -45.00, z-score = -3.03, R) >droEre2.scaffold_4929 1289891 98 + 26641161 ---GGCUUG---GGGCUUAGGAUGUU--AUGGUGGGGAGGUGUAUCGUCCGUGAG---------------UCCCUUGACGAC-CUUGACUGACCAAUGACUUCACUGACCCUUCUGAUCGCG ---(((..(---(((.((((((.(((--(((((.(((((((((...(..(....)---------------..)....)).))-)))..)).))).))))).)).))))))))...).))... ( -28.90, z-score = 0.28, R) >droAna3.scaffold_13339 1575759 97 - 4599533 ----------GCGGGCAGGAUGUGCUUCUUGGUGC-CUGGCGGCCGGAUCAGGGCACGAAAGGCCUAUCUACCCCACAGGACACGCCCCCGGUUGCGGUCGCCACUCG-------------- ----------((((((((((......)))).((((-(((..((..((((..((((.(....)))))))))..))..)))).)))))))(((....)))..))......-------------- ( -37.30, z-score = 0.84, R) >consensus ___GGC__G__CGGGCUUAGGAUGUU__AUGGUGC_AGGGUGUAUCGUCCACGGG_CGAGGCAACGCUCGGCCUGGGACCAC_CUUGGCUGGCCACUGACUCCACUGACCCUUAC_GACACG ............(((((...((.(((...((((((.((((((....((((.((((.((((......)))).))))))))))).))).))..))))..))).))...)))))........... (-11.62 = -15.58 + 3.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:58 2011