| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,376,604 – 22,376,666 |
| Length | 62 |
| Max. P | 0.997838 |
| Location | 22,376,604 – 22,376,666 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 69.04 |
| Shannon entropy | 0.50241 |
| G+C content | 0.63484 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -18.65 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22376604 62 + 23011544 CUCGUUUGGCAGCUGCACAGGCGGCAACGGCAUCGGCCUCGGCCGCGGCUGCGUUUGAGGAC ((((....((((((((...(.((....)).)...(((....)))))))))))...))))... ( -31.50, z-score = -2.60, R) >dp4.Unknown_group_6 73587 52 - 78653 -AACGUCGGCAAUUGUAUAGUAGGCA--GGGAUGGUACUUGUCUACGGUGAAAAU------- -..(..(.((....))...(((((((--((.......))))))))))..).....------- ( -13.50, z-score = -2.22, R) >droSim1.chrU 6196572 57 - 15797150 -----UUGGCAGCUGCACAGGCGGCAACGGCAUCGGCCUCGGCCGCGGCUGCGUUUGAGGAC -----...((((((((...(.((....)).)...(((....))))))))))).......... ( -28.70, z-score = -2.36, R) >droSec1.super_72 23928 57 + 149286 -----UUGGCAGCUGCACAGGCGGCAACGGCAUCGGCCUCGGCCGCGGCUGCGUUUGAGGAC -----...((((((((...(.((....)).)...(((....))))))))))).......... ( -28.70, z-score = -2.36, R) >consensus _____UUGGCAGCUGCACAGGCGGCAACGGCAUCGGCCUCGGCCGCGGCUGCGUUUGAGGAC ........((((((((...(.((....)).)...(((....))))))))))).......... (-18.65 = -18.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:54 2011