| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,363,221 – 22,363,290 |
| Length | 69 |
| Max. P | 0.763084 |
| Location | 22,363,221 – 22,363,290 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 73.10 |
| Shannon entropy | 0.35569 |
| G+C content | 0.30967 |
| Mean single sequence MFE | -8.60 |
| Consensus MFE | -6.55 |
| Energy contribution | -7.33 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22363221 69 - 23011544 AAUAUCAAAAAUUAACAUUUCCCAAAUACCUUAUUGCUCAGAAUAUGCUUGCCAGUUUGCAACAAAACG .............................................((.((((......))))))..... ( -2.90, z-score = 0.91, R) >droSim1.chr2L_random 908447 59 - 909653 ----------AAUAUGAAAUAUAAAAUACCUUUUUGCUGAGAAUAUGAGUGCCAGUUCACAGCAAAACU ----------.....................((((((((.((((.((.....)))))).)))))))).. ( -11.70, z-score = -2.72, R) >droSec1.super_101 82895 59 - 94122 ----------AAUAUCAAAUAUAAAAUACCUUUUUGCUGAGAAUAUGUGUGCCAGUUCACAGCAAAACU ----------.....................((((((((.((((.((.....)))))).)))))))).. ( -11.20, z-score = -2.23, R) >consensus __________AAUAUCAAAUAUAAAAUACCUUUUUGCUGAGAAUAUGAGUGCCAGUUCACAGCAAAACU ...............................((((((((.((((.((.....)))))).)))))))).. ( -6.55 = -7.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:53 2011