| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,359,580 – 22,359,660 |
| Length | 80 |
| Max. P | 0.999922 |
| Location | 22,359,580 – 22,359,660 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 56.33 |
| Shannon entropy | 0.72381 |
| G+C content | 0.45760 |
| Mean single sequence MFE | -17.68 |
| Consensus MFE | -9.86 |
| Energy contribution | -11.92 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22359580 80 + 23011544 CGCCUUUUUUGCGCUUUGGAGAUUCAUCUAAUAGCUUAAGGCCAUUAAACUGUGAAUUAAGCGCGGAAAGAAGAUCAUCG ...(((((((.(((.(((((......)))))..((((((..(((......)).)..))))))))).)))))))....... ( -21.70, z-score = -1.72, R) >dp4.Unknown_group_130 8514 78 + 21585 UGAUCCUUUUACGCCUCGGAGACUCAUUUAACAGUUGCAGACUGCCAAAUUGAGAUUCCAUGGCUAGGCGCCGAUCGU-- .((((.......(((..((((.(((((((..(((((...)))))..))).)))).))))..)))..(....)))))..-- ( -21.20, z-score = -1.38, R) >droPer1.super_171 38370 78 - 68591 UGACCUUUUUGCGCCUCGGAGACUCAUUCAGCAGUUUUAAACCACUAAGCUGAGCGUCCAUGGCUAGGAGCCGAUCGU-- ..........((((...(....)....((((((((........)))..)))))))))...((((.....)))).....-- ( -16.60, z-score = 0.91, R) >droWil1.scaffold_181075 254691 67 + 1141854 -------UCUACGUUUCGAAGACUUAUUCAUAAGCGAUAAGCUUCUAAACUGAGUCUCCACCGCAGUAAACUCC------ -------.....((((.((((.((((((.......)))))))))).)))).((((...(......)...)))).------ ( -11.20, z-score = -1.12, R) >consensus UGACCUUUUUACGCCUCGGAGACUCAUUCAACAGCUUUAAACCACUAAACUGAGAAUCCAUCGCUAGAAGCCGAUCGU__ ............(((..((((.(((((((((((((.....))))))))).)))).))))..)))................ ( -9.86 = -11.92 + 2.06)
| Location | 22,359,580 – 22,359,660 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 56.33 |
| Shannon entropy | 0.72381 |
| G+C content | 0.45760 |
| Mean single sequence MFE | -25.47 |
| Consensus MFE | -15.98 |
| Energy contribution | -16.35 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.91 |
| SVM RNA-class probability | 0.999922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22359580 80 - 23011544 CGAUGAUCUUCUUUCCGCGCUUAAUUCACAGUUUAAUGGCCUUAAGCUAUUAGAUGAAUCUCCAAAGCGCAAAAAAGGCG .........(((((..((((((........((((((((((.....)))))))))).........))))))...))))).. ( -19.43, z-score = -1.82, R) >dp4.Unknown_group_130 8514 78 - 21585 --ACGAUCGGCGCCUAGCCAUGGAAUCUCAAUUUGGCAGUCUGCAACUGUUAAAUGAGUCUCCGAGGCGUAAAAGGAUCA --..((((.((((((.....((((..((((.(((((((((.....)))))))))))))..)))))))))).....)))). ( -29.80, z-score = -3.56, R) >droPer1.super_171 38370 78 + 68591 --ACGAUCGGCUCCUAGCCAUGGACGCUCAGCUUAGUGGUUUAAAACUGCUGAAUGAGUCUCCGAGGCGCAAAAAGGUCA --..((((........(((.((((.(((((..((((..((.....))..)))).))))).)))).))).......)))). ( -29.76, z-score = -2.89, R) >droWil1.scaffold_181075 254691 67 - 1141854 ------GGAGUUUACUGCGGUGGAGACUCAGUUUAGAAGCUUAUCGCUUAUGAAUAAGUCUUCGAAACGUAGA------- ------........(((((.((((((((..(((((.((((.....)))).))))).))))))))...))))).------- ( -22.90, z-score = -3.21, R) >consensus __ACGAUCGGCUCCCAGCCAUGGAAUCUCAGUUUAGUAGCCUAAAACUGUUAAAUGAGUCUCCGAAGCGCAAAAAGGUCA ................(((.((((.(((((.(((((((((.....)))))))))))))).)))).)))............ (-15.98 = -16.35 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:52 2011