| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,340,562 – 22,340,629 |
| Length | 67 |
| Max. P | 0.961391 |
| Location | 22,340,562 – 22,340,629 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 48.97 |
| Shannon entropy | 0.82609 |
| G+C content | 0.48884 |
| Mean single sequence MFE | -13.05 |
| Consensus MFE | -7.62 |
| Energy contribution | -7.56 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22340562 67 - 23011544 CCUAUUCCUGAUUGAACGCUGCAGGUGGCCCCAAUCAUACAAAGCAAUGCCGCCAACAAAAGUUAAG ..............(((..((..((((((...................))))))..))...)))... ( -10.31, z-score = 0.33, R) >droSim1.chrU 8485237 55 - 15797150 ------------UGGACGCUGCUGAUGGCCACAAUCACACGGAGAAAUGCCGUCAGCAAAGGUUGGG ------------(.(((..((((((((((.....((.....)).....))))))))))...))).). ( -18.90, z-score = -1.96, R) >droSec1.super_64 56844 60 - 179039 CCUAUUCAUAAGUGAGCUCUGCUGGUGGCCACAAUCA-------CAAUGUCGUCAGUAAAAGUUGAU ...........((.((((.(((((..(((........-------....)))..)))))..)))).)) ( -11.20, z-score = -0.14, R) >droEre2.scaffold_4929 814172 52 + 26641161 ---------------UCUAUUGCGCUGUCUCUACUAGGCUGAGACAACAAGGCUGUCAAUGGUUGAG ---------------.(((((((((((((((.........))))).....))).).))))))..... ( -11.80, z-score = -0.10, R) >consensus ____________UGAACGCUGCUGGUGGCCACAAUCA_ACGAAGCAAUGCCGCCAGCAAAAGUUGAG ...................((((((((((...................))))))))))......... ( -7.62 = -7.56 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:50 2011