| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,272,586 – 22,272,660 |
| Length | 74 |
| Max. P | 0.740231 |
| Location | 22,272,586 – 22,272,660 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Shannon entropy | 0.40010 |
| G+C content | 0.56382 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -19.31 |
| Energy contribution | -19.13 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22272586 74 - 23011544 AGUGAGGCGACGGCGUUGUCGCGCUGUCGCCUAGUGUAGUCCAGCU-AGCGUGUGUAAAGGA-UAGAUCGAUGCGU----- ....((((((((((((....))))))))))))...........((.-..(((.(((.....)-)).).))..))..----- ( -26.10, z-score = -0.96, R) >droSec1.super_60 30125 74 + 163194 AGUGAGGCGACGGCGUUGUCGCGCUGUCGCCAAGUGUAGUCCAGCU-AGGGUGUGUAAAGGA-UAGAUCGACGCGU----- .(((.(((((((((((....))))))))))).......((((.((.-.......))...)))-).......)))..----- ( -27.80, z-score = -1.73, R) >droYak2.chr3L 23754478 70 - 24197627 AGUGAGGCGACGGCGUUGUCGCGCUGUCGCCAAGUGUAGUCCAGCU-AGCGUGUAUAAAGCA-UAGAUCCGU--------- .....(((((((((((....)))))))))))..((.(((.....))-)))((((.....)))-)........--------- ( -24.50, z-score = -1.67, R) >droEre2.scaffold_4929 22062671 74 - 26641161 AGUGAGGCGAUGGCGUUGUCGCGCUGUCGCCACGUGUAGUCCAGCU-AGCGUGUGUAAAGCA-UAGAUCGAUGCGU----- .....(((((((((((....)))))))))))((((.(((.....))-))))).......(((-(......))))..----- ( -27.50, z-score = -1.14, R) >droWil1.scaffold_181154 2784540 76 + 4610121 AGUGAGGCGACAGCGUUGUCGCGCUGUCGCCGAGUGUAGUCCAGCUUGGCGUCUAAGAAGAAGUAGAUCGGUGCGU----- ....((((((((((((....))))))))(((((((........)))))))))))........(((......)))..----- ( -29.10, z-score = -1.86, R) >droVir3.scaffold_12958 3169051 72 - 3547706 AGUGAGGGGACGGCGUUGUCGCGCUGACGCCGAGUGUAGUCCAGCU---UGCGUGUUACACA-UAGAUCGAUGAGU----- .(((.(....)(((((....)))))((((((((((........)))---)).))))).))).-.............----- ( -19.70, z-score = 1.04, R) >droMoj3.scaffold_6500 1116600 80 + 32352404 AGCGAGGUGACGGCGGUGUUGCGCUGUCGCUGAGUGUAGUCCAACU-UGCGUUUGAAAAGCAAAAGAAGCAGGUACUGAUG .((..((((((((((......))))))))))..)).((((...(((-(((.((((.....))))....))))))))))... ( -28.70, z-score = -1.94, R) >consensus AGUGAGGCGACGGCGUUGUCGCGCUGUCGCCAAGUGUAGUCCAGCU_AGCGUGUGUAAAGCA_UAGAUCGAUGCGU_____ .....((((((((((......)))))))))).................................................. (-19.31 = -19.13 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:47 2011