| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,019,883 – 2,019,979 |
| Length | 96 |
| Max. P | 0.756328 |
| Location | 2,019,883 – 2,019,979 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.97 |
| Shannon entropy | 0.24271 |
| G+C content | 0.53695 |
| Mean single sequence MFE | -34.54 |
| Consensus MFE | -25.52 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2019883 96 + 23011544 GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGGUUUUUCAUUGCUUUU---CAGUGGGCGUGUCGUCGGCAUUUUCCGACCCUGCGCUUCGCUUG ((((((.(((........(((.((((((...((..(........)..))...---..)))))).))).(((((......)))))))).))))))..... ( -35.70, z-score = -2.43, R) >droSim1.chr2L 1989873 94 + 22036055 GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGGUUUUUCACUGCUUUU---CAGUGGGCGUGUCGUCGGCGUUUUCCGCCCCUGCGCCUCGCU-- ((.(((.(((........(((.((((((..((((((.....)))))).....---..)))))).)))....((((.....))))))).))).))...-- ( -32.90, z-score = -0.69, R) >droSec1.super_14 1966628 94 + 2068291 GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGGUUUUUCACUGCUUUU---CAGUGGGCGUGUCGUCGGCGUUUUCCGCCCCUGCGCUUCACU-- ((((((.(((........(((.((((((..((((((.....)))))).....---..)))))).)))....((((.....))))))).))))))...-- ( -37.00, z-score = -2.59, R) >droYak2.chr2L 2004964 92 + 22324452 GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGAUAUUUCACUGCUUUU---CAGUGGGCGUGUCGGCGGCAUUUUCCGCCCCUGCGCUUCG---- ((((((.(((........(((.((((((..(((((((...))))))).....---..)))))).))).(((((......)))))))).)))))).---- ( -40.70, z-score = -3.77, R) >droEre2.scaffold_4929 2067257 99 + 26641161 GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGAUUUUUCACUGCUUUUUUACAGUGGGCGUGUCGGCGGCAUUUUCCGCCCCUGCGCUUCGCUUG ((((((.(((........(((.(((((((((((((((...))))))).......))).))))).))).(((((......)))))))).))))))..... ( -40.31, z-score = -2.97, R) >droAna3.scaffold_12916 9736008 93 - 16180835 GUAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGAUUUUUCAGUGCUUUA----GGUGGGCGUUUCAUUUGGAUAUUUCACCCUCGCUUACCCCU-- ((((((..(((...........((((((.(((.((((...)))).))....)----.))))))..........((....)))))..))).)))....-- ( -20.60, z-score = 1.03, R) >consensus GAAGCGGAGGUAAAAGUUGCAGGCUCAUGUCAGUGGAUUUUUCACUGCUUUU___CAGUGGGCGUGUCGUCGGCAUUUUCCGCCCCUGCGCUUCGCU__ ((((((.(((........(((.((((((..(((((((...)))))))..........)))))).)))...(((......)))..))).))))))..... (-25.52 = -25.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:58 2011