| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,093,174 – 22,093,231 |
| Length | 57 |
| Max. P | 0.910622 |
| Location | 22,093,174 – 22,093,231 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 82.42 |
| Shannon entropy | 0.23698 |
| G+C content | 0.30056 |
| Mean single sequence MFE | -9.87 |
| Consensus MFE | -9.73 |
| Energy contribution | -9.73 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22093174 57 + 23011544 -----UAUUGUUAUUGUUAUAUUUGGUCACUGCAUCGUUUAGUUUGGCCUUAUAUAUGUACA -----............(((((..(((((..((........)).)))))..)))))...... ( -9.80, z-score = -0.94, R) >droSim1.chr2L 21664033 58 + 22036055 UAUGUUAUUACAUUUGUUAUAUUUGGUCACUGCAUCGUUCAGUUUGGCCUUAUAUACA---- .((((....))))....(((((..(((((..((........)).)))))..)))))..---- ( -10.10, z-score = -1.32, R) >droSec1.super_28 693948 58 + 873875 UAUGUUAUUAUAUUUGUUAUAUUUGGUCACUGCAUCGUUCAGUUUGGCCUUAUAUACA---- .................(((((..(((((..((........)).)))))..)))))..---- ( -9.70, z-score = -1.26, R) >consensus UAUGUUAUUAUAUUUGUUAUAUUUGGUCACUGCAUCGUUCAGUUUGGCCUUAUAUACA____ .................(((((..(((((..((........)).)))))..)))))...... ( -9.73 = -9.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:40 2011