| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,072,674 – 22,072,745 |
| Length | 71 |
| Max. P | 0.557877 |
| Location | 22,072,674 – 22,072,745 |
|---|---|
| Length | 71 |
| Sequences | 3 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 77.00 |
| Shannon entropy | 0.29748 |
| G+C content | 0.46435 |
| Mean single sequence MFE | -15.43 |
| Consensus MFE | -12.12 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22072674 71 + 23011544 GAUUGCACGGGCAGUGCGAUCUAUUGAUGUUUUUUUGACCUGUUCGGUAGUUCUAUCGAGCUAUUUCUACC ((((((((.....))))))))....................((((((((....)))))))).......... ( -20.60, z-score = -2.56, R) >droSim1.chr2L 21646394 55 + 22036055 GAUUGCACGGGCAGUGCAAUCUAUUGAUGUUUUGUUGACCCGUUCGCUAGUUCCG---------------- ((((((((.....))))))))..................................---------------- ( -12.00, z-score = -0.32, R) >droSec1.super_28 671478 58 + 873875 GAUUGCACGGGCAGUGCAAUCUAUUGAUGUUUUGUUGACCCGAUCGCUAGUUCUAUCG------------- ((((((((.....))))))))....((((..(((.(((.....))).)))..).))).------------- ( -13.70, z-score = -0.82, R) >consensus GAUUGCACGGGCAGUGCAAUCUAUUGAUGUUUUGUUGACCCGUUCGCUAGUUCUAUCG_____________ ((((((((.....)))))))).................................................. (-12.12 = -11.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:37 2011