| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,054,552 – 22,054,606 |
| Length | 54 |
| Max. P | 0.635557 |
| Location | 22,054,552 – 22,054,606 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 71.43 |
| Shannon entropy | 0.51363 |
| G+C content | 0.42355 |
| Mean single sequence MFE | -13.76 |
| Consensus MFE | -6.30 |
| Energy contribution | -7.78 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22054552 54 - 23011544 CUCCGCAGGCUUUUCCGCAAAAGUUAAAGAAAUCUUUAAGGAGAACUUGCAAAA--------- ....(((((.((((((((....))(((((....))))).)))))))))))....--------- ( -14.90, z-score = -2.29, R) >droAna3.scaffold_13337 539897 63 + 23293914 UUUCUCUAGUUCGUCCGCGAAAGCUAAAGAAAUCUCUGAGUCAGACGUGCACCAUGUAUUGUC (((((.(((((((....)))..)))).)))))...........(((((((.....))).)))) ( -11.70, z-score = -0.46, R) >droSim1.chr2L 21617929 63 - 22036055 CUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAUGGAGAACCUGCACUAUAUAUCGUC ....(((((.((.((((.......(((((....))))))))).)))))))............. ( -15.81, z-score = -2.44, R) >droSec1.super_28 653162 63 - 873875 CUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAUGGAGAACCUGCACUAUAUAUCGUC ....(((((.((.((((.......(((((....))))))))).)))))))............. ( -15.81, z-score = -2.44, R) >droEre2.scaffold_4845 20136400 61 + 22589142 UUUCUCACUUUAGUCCGCAAUAGCCGAAGAAAUCUCUGAGUCGGACCUGCA--AUGUAGUGUC .....((((...((..(((....(((((((....)))...))))...))).--))..)))).. ( -10.60, z-score = 0.06, R) >consensus CUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAAGGAGAACCUGCACUAUAUAUCGUC ....(((((.((.(((((....))(((((....))))).))).)))))))............. ( -6.30 = -7.78 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:35 2011