| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,043,686 – 22,043,805 |
| Length | 119 |
| Max. P | 0.726603 |
| Location | 22,043,686 – 22,043,805 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.92 |
| Shannon entropy | 0.24299 |
| G+C content | 0.34740 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.12 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22043686 119 + 23011544 -UCUUAUUUGCCGCACUUAAACAACCAUGUAUAAGAAUGGUUUAAUCUUCUUUCCCAAAAAUCUUCUCACCUUCAAGAGCUGUACUCAUUAGCUCGGCCAAGCAAUUUAGCAAUAAACUA -........(((..........((((((........))))))..................................((((((.......)))))))))...((......))......... ( -19.70, z-score = -1.88, R) >droSim1.chr2L 21606388 118 + 22036055 -UUUUAUUUGCAGAACUUGAA-AACCAUGUAUAAGAAUGGCUUAAUCUUCCUUCCGAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCUGCCAAGCAAUUUAGCAAUAAGUUA -........(((((.((((((-..((((........))))...............((((.....))))...)))))).((((.......))))))))).....((((((....)))))). ( -24.90, z-score = -1.65, R) >droSec1.super_28 642317 118 + 873875 -UUUUAUUUGCAGAACUUGAA-AACCAUGUAUAAGAAUGGUUUGAUCUUCCUUCCGAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCUGCCAAGCAAUUUAGCAACAAAUUA -........(((((.((((((-((((((........)))))))............((((.....))))....))))).((((.......)))))))))...((......))......... ( -26.50, z-score = -2.28, R) >droEre2.scaffold_4845 20124960 120 - 22589142 UCUAAAUCUGCCGUAGUUAACAAACCAUGUAUAAAAAUGGUUUAAUUUUCUUUCCCAGAAAACGUCUUACCUUCUAGAGUUGUUCUUAUUAGCUCGGCCAAGCAAUUCAUCAAUAAACUA .........((((.((((((.(((((((........))))))).............(((((((.(((........)))))).))))..))))))))))...................... ( -21.90, z-score = -2.72, R) >consensus _UUUUAUUUGCAGAACUUAAA_AACCAUGUAUAAGAAUGGUUUAAUCUUCCUUCCCAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCGGCCAAGCAAUUUAGCAAUAAACUA .........(((..........((((((........))))))..................................((((((.......)))))))))...................... (-15.56 = -15.12 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:34 2011