| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,019,030 – 2,019,189 |
| Length | 159 |
| Max. P | 0.831124 |
| Location | 2,019,030 – 2,019,189 |
|---|---|
| Length | 159 |
| Sequences | 5 |
| Columns | 160 |
| Reading direction | forward |
| Mean pairwise identity | 78.94 |
| Shannon entropy | 0.36189 |
| G+C content | 0.51131 |
| Mean single sequence MFE | -53.64 |
| Consensus MFE | -29.16 |
| Energy contribution | -30.08 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2019030 159 + 23011544 GUGAAAGCGAAAGAGGG-GGCCAAUGAAGGGUGGGGGAAGUGGAAAUGAAAAUGGAAGGGGAAAAGCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGAGCCUAGGCAAGCAAAUAUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCCUCGUGC ......(((...(((((-..((......))((((..(...((((((((....(((((.(((((....(((((((..(((........))).))))))).((....)).........)))).).)))))....)).))))))..)..)))).))))).))) ( -51.20, z-score = -0.64, R) >droEre2.scaffold_4929 2066486 130 + 26641161 -----------------------GUGCGCGAAAGAGAGGGCCAAUGGGGAAA------GGAGAA-GCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGAGCGUAGGCAAGCAAAUAUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCCUCGUGC -----------------------(..(.(....).(((((...((((..(..------((((((-(((((((((..(((........))).))))))).))(((((..((((.........))))...))))).))))))...)..)))).))))))..) ( -47.00, z-score = -2.42, R) >droYak2.chr2L 2004166 145 + 22324452 ---------AUGGGUGGUGGGGGGUGUGAGAAGUGGAAAGUGGAAAGUGGAA------GGAGAAAGCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGAGCGUGGGCAAGCAAAUAUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCCUCGUGC ---------..........(((((((((.((((((((((((((((.((((((------(((............)))(((((((((.((((....)))).)))))))))........)))))).))))))......)))))..)))))))))))))).... ( -56.60, z-score = -3.02, R) >droSec1.super_14 1965819 153 + 2068291 GUGAAAGCGAAAGAGGGCGGCCACUGAAGGGUGGGGAAAGUGGAAAUGAAA-------GGGAAAAGCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGGCUGUAGGCAAGCAAAAUUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCCUCGUGC ......(((...(((((...(((((....))))).....((((((((....-------((((((((((((((((..(((........))).))))))))))(((((..((((.........))))...))))).))))))..)))))))).))))).))) ( -57.90, z-score = -2.74, R) >droSim1.chr2L 1989047 153 + 22036055 GUGAAAGCGAAAGAGGGCGGCCACUAAAGGGUGGGGAAAGUGGAAAUGGAA-------GGGAAAAGCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGGCUGUAGGCAAGCAAAUAUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCUUCGUGC ......(((...(((((...(((((....))))).....((((((((....-------((((((((((((((((..(((........))).))))))))))(((((..((((.........))))...))))).))))))..)))))))).))))).))) ( -55.50, z-score = -2.22, R) >consensus GUGAAAGCGAAAGAGGG_GGCCACUGAAGGGUGGGGAAAGUGGAAAUGGAAA______GGGAAAAGCCGCAUAUCCUGCUCAUGUAUGCAUGUGUGCGAGCGUAGGCAAGCAAAUAUUCCAUGUUCCACCUGCGUUUUCCGAAUUUCCAUACCCUCGUGC ...........................((((((.(((((.((((((.....................(((((((..(((........))).))))))).(((((((..((((.........))))...)))))))))))))..))))).))))))..... (-29.16 = -30.08 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:57 2011