| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,029,412 – 22,029,493 |
| Length | 81 |
| Max. P | 0.528294 |
| Location | 22,029,412 – 22,029,493 |
|---|---|
| Length | 81 |
| Sequences | 3 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.14045 |
| G+C content | 0.48226 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -20.81 |
| Energy contribution | -20.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22029412 81 - 23011544 CGCUGUGCUGGGAUUGCUAUUCUGAAUG----CUAUAUCUGCUCGACGGGCAUAUGGACAGGCACAGACCUACAUACUUGUAGGU ..((((((((((((....)))))...((----(((((..((((.....))))))))).)))))))))(((((((....))))))) ( -29.10, z-score = -3.01, R) >droSec1.super_28 628717 85 - 873875 UGCUGUGCAGGGAUUACUAUCCUGAAUGAUAUAUAUAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGU ((((((.((.((((...((((......)))).....))))(((.....)))...)).))).)))...(((((((....))))))) ( -22.60, z-score = -0.80, R) >droSim1.chr2L 21592382 85 - 22036055 CGCUGUGCAGGGAUUACUAUCCUGAAUGAUAUAUAUAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGU .(((((.((.((((...((((......)))).....))))(((.....)))...)).))).))....(((((((....))))))) ( -22.50, z-score = -0.83, R) >consensus CGCUGUGCAGGGAUUACUAUCCUGAAUGAUAUAUAUAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGU ....((((.(((((....)))))..............((((((.....)))....)))...))))..(((((((....))))))) (-20.81 = -20.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:31 2011