| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,027,352 – 22,027,450 |
| Length | 98 |
| Max. P | 0.588360 |
| Location | 22,027,352 – 22,027,450 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.42 |
| Shannon entropy | 0.26604 |
| G+C content | 0.50239 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -22.15 |
| Energy contribution | -23.40 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22027352 98 + 23011544 CAACAAAACUGCCGACAUUGAAACUGUCGCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGUAUUAAGAGGCAGGCGCGG-GAACGCCAAGGUGAGUG .......((((((((((.......))))(((.(((((.((((.((.(((......))).)).))))...))))))))(((.-...)))...))).))). ( -30.70, z-score = -0.90, R) >droYak2.chr2R 20347782 86 - 21139217 CAACAAAACUGCCGACAUUGGAACUGUCUCUAUGUCUAAGUGGA-GGCUAAUGUGGGUAGAGCAUUACAAAGUAGGUGCGAUGAGUG------------ ........(((((.((((((.....((((((((......)))))-))))))))).))))).(((((........)))))........------------ ( -26.90, z-score = -2.66, R) >droSec1.super_28 626682 97 + 873875 CAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUUAGAGGCAGGUGCAA--AAUGCCAAGGUGAGUG ........(((((((((.......))))......((((((((.((.(((......))).)).)))))))))))))(.((..--...))).......... ( -30.60, z-score = -1.57, R) >droSim1.chr2L 21590327 98 + 22036055 CAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUUAGAGGCAGGUGCGG-GAAUGCCAAGGUGAGUG ........(((((((((.......))))......((((((((.((.(((......))).)).)))))))))))))(.(((.-...)))).......... ( -31.10, z-score = -1.23, R) >consensus CAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUAAGAGGCAGGUGCGA_GAAUGCCAAGGUGAGUG ........(((((((((.......))))......((((((((.((.(((......))).)).)))))))))))))..(((.....)))........... (-22.15 = -23.40 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:31 2011