| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,011,952 – 22,012,031 |
| Length | 79 |
| Max. P | 0.788747 |
| Location | 22,011,952 – 22,012,031 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 62.79 |
| Shannon entropy | 0.62394 |
| G+C content | 0.43514 |
| Mean single sequence MFE | -20.01 |
| Consensus MFE | -6.32 |
| Energy contribution | -7.24 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22011952 79 - 23011544 CAUGCCUCGGUGUCAAGUAAAUGCA-CCCUUAUAGGUUCCA-AGAUAUCUAAAUAUCUGCUUUGAACCUAUAGUCCAGGCC------------ ...((((.((((.((......))))-)).((((((((((..-((((((....)))))).....))))))))))...)))).------------ ( -24.90, z-score = -4.38, R) >droEre2.scaffold_4845 20089254 79 + 22589142 CAUGGCUUGCCAUCAAGCAGAAGCACCUCCUAUAGAAUGCA-AGAUAUCCUAAAAUCUGCUCCCAACUUAUA-UCGUGGCC------------ ........(((((..((((((.(((..((.....)).))).-((.....))....))))))...........-..))))).------------ ( -12.26, z-score = 0.49, R) >droSec1.super_28 612085 80 - 873875 CAUGCCUCGCUGUCAAGCAAAUGCACCCCUUAUAGGAUCCG-AGACAUCUAAAAGUCUGCUCUGAACUUAUAGCCGAGGCC------------ ...((((((((((.(((.....((...((.....)).....-((((........))))))......))))))).)))))).------------ ( -21.10, z-score = -1.93, R) >droSim1.chr2L 21575728 80 - 22036055 CAUGCCUCGCUGUCAAGCAAAUGCACCCCUUAUAGGAUCCG-AGAUAUCUAAAAGUCUGCUCUGAACUUAUAGUCGAGGCC------------ ...((((((((....)))...........(((((((.((.(-((....(.....)....))).)).)))))))..))))).------------ ( -20.90, z-score = -2.00, R) >droVir3.scaffold_12963 14952519 89 + 20206255 ----AUUAUCUUAGAACUAAAUACUCUAUAUAUACUUUAUAUAUAUAGACAGUGCUGUGUGGUGCACAUACAUUCGAGUUCAAAGGCAGCAUU ----....((((.(((((......((((((((((.....))))))))))..((((........)))).........))))).))))....... ( -20.90, z-score = -2.04, R) >consensus CAUGCCUCGCUGUCAAGCAAAUGCACCCCUUAUAGGAUCCA_AGAUAUCUAAAAAUCUGCUCUGAACUUAUAGUCGAGGCC____________ ...((((((.......((....)).....(((((((.((...((((........)))).....)).))))))).))))))............. ( -6.32 = -7.24 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:30 2011