| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,962,306 – 21,962,364 |
| Length | 58 |
| Max. P | 0.607162 |
| Location | 21,962,306 – 21,962,364 |
|---|---|
| Length | 58 |
| Sequences | 8 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 66.08 |
| Shannon entropy | 0.63755 |
| G+C content | 0.49195 |
| Mean single sequence MFE | -14.22 |
| Consensus MFE | -6.55 |
| Energy contribution | -6.48 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21962306 58 + 23011544 CAUACAACCCC-UGUUGUUGCUCCUAGUGGUCGACAAUUGUCGAUUGUCAAUUGACGAU----- ...(((((...-.)))))..........(((((((....)))))))(((....)))...----- ( -12.80, z-score = -1.07, R) >droPer1.super_5 2967999 54 - 6813705 ----CAGGAGG-UAUGUGUAUAUGCAGUGGUCGACGACUGUCGAUUGUCAAUUGCCGAU----- ----.....((-(((((......)))(..((((((....))))))..)....))))...----- ( -13.60, z-score = -0.42, R) >dp4.chr4_group1 1360651 54 + 5278887 ----CAGGAGG-UACGUGUAUAUGCAGUGGUCGACGACUGUCGAUUGUCAAUUGCCGAU----- ----.....((-((..(((....)))(..((((((....))))))..)....))))...----- ( -13.00, z-score = 0.08, R) >droEre2.scaffold_4845 20042714 58 - 22589142 CAUACAGCCCC-UGCAGUUGCCUCCAGUGGUCGGCAAUUGUCGAUUGUCAAUUGACGUU----- ..........(-.(((((((((.((...))..))))))))).)...(((....)))...----- ( -15.00, z-score = -1.03, R) >droYak2.chr2R 20282820 58 - 21139217 CAUUCAACCCC-UGUAGUUUCCUCUAGUGGUUGGGCAUUGUCGAUUGUCAAUUGACGUU----- ..(((((((.(-((.((....)).))).)))))))....((((((.....))))))...----- ( -14.00, z-score = -1.41, R) >droSec1.super_28 568548 58 + 873875 CAUACAACCCC-UGUAGUUGCCCCUAGUGGUCGGCAAUUGUCGAUUGUCAAUUGACGAU----- ..........(-..((((((((((....))..))))))))..)((((((....))))))----- ( -14.80, z-score = -1.64, R) >droSim1.chr2L 21534325 59 + 22036055 CAUACAACCCCCUGUAGUUGCCCCUAGUGGUCGGCAAUUGUCGAUUGUCAAUUGACGAU----- ...........(..((((((((((....))..))))))))..)((((((....))))))----- ( -14.80, z-score = -1.69, R) >droVir3.scaffold_12963 14905606 53 - 20206255 -----------CAAAUGGCGUCUGUGGCAGCGGCUAGUGGCCAAUUGUCAAUGGCCGAUCCGAU -----------.............(((...((((((.((((.....)))).))))))..))).. ( -15.80, z-score = -0.10, R) >consensus CAUACAACCCC_UGUAGUUGCCUCUAGUGGUCGGCAAUUGUCGAUUGUCAAUUGACGAU_____ ................((((......(..((((((....))))))..)....))))........ ( -6.55 = -6.48 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:22 2011