| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,956,137 – 21,956,232 |
| Length | 95 |
| Max. P | 0.776178 |
| Location | 21,956,137 – 21,956,232 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 54.34 |
| Shannon entropy | 0.75312 |
| G+C content | 0.38125 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -8.57 |
| Energy contribution | -6.50 |
| Covariance contribution | -2.07 |
| Combinations/Pair | 1.70 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.776178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21956137 95 + 23011544 ----------------GUGUCAAUUGAGAUAUUUCUGCGAUAUCAUUCGAUGUGUUUUAAAAAGCAACAUGGAUUGCAUUUCCAGUUUUUUCAGUUCGCACCAAACUGAUA ----------------((((.((((((((.....(((.((.((((.((.((((((((....)))).)))).)).)).)).)))))...)))))))).)))).......... ( -23.60, z-score = -2.24, R) >droPer1.super_5 3855323 103 + 6813705 GAUGAUGGUUGUGGAGGGGGGGGGGUAUCUACUUACGAGAGAUCUUUCUGUGCG-----AAAAACCAUAUAAAUUAAUCAUUUAAUGGGUUGCUCUUGAAGUUAUCUU--- ((((((.....(.((((.((..((((.(((.......))).))))..))..(((-----(....((((.(((((.....))))))))).)))))))).).))))))..--- ( -22.80, z-score = -0.32, R) >dp4.chr4_group1 3927721 100 - 5278887 GAUGAUGGUUAU---GGGGAGGGGGUAUCUACUUACGAGAGAUCUUUCUGUGCG-----AAAAACCAUAUAAAUUAAUCAUUUAAUGGGUUGCUCUUGAAGUUAUCUU--- ((((((..(((.---(((.((..((.((((.((....))))))))..)).)(((-----(....((((.(((((.....))))))))).)))))).))).))))))..--- ( -21.30, z-score = -0.46, R) >droYak2.chr2R 20276053 77 - 21139217 ----------------GUGGCAAUUGAGAUAUUUCUGCGGUAACAUUCGACGUG-----------------GAGUGCAUUU-CAGUUUCUUUAGUUUACACUGAACUUAUA ----------------..((.(((((((((..(((..((...........))..-----------------)))...))))-))))).))(((((....)))))....... ( -15.40, z-score = -0.50, R) >droSec1.super_28 562476 88 + 873875 ----------------GUGUCAAUUGAGAUAUUCCUGCGAUAUCAUUCGAUGUGUUUUAAAAAGCAGCAUGGAUUGCAUUUGCAGUUUCUUCACUUCGCACCGA------- ----------------((((.((.(((((.....((((((...((.((.((((((((....))))).))).)).))...))))))..)).))).)).))))...------- ( -21.60, z-score = -1.05, R) >droSim1.chr2L 21528293 88 + 22036055 ----------------GUGUCAAUUGAGAUAUUCCUGCGAUAUCAUUCGAUGUGUUUUAAAAAGCAGCAUGGAUUGCAUUUGCAGUUUCUUCACUUCGCACCGA------- ----------------((((.((.(((((.....((((((...((.((.((((((((....))))).))).)).))...))))))..)).))).)).))))...------- ( -21.60, z-score = -1.05, R) >consensus ________________GUGUCAAUUGAGAUAUUUCUGCGAUAUCAUUCGAUGUG_____AAAAGCAACAUGGAUUGCAUUUGCAGUUUCUUCACUUCGCACCGA_CUU___ ................(((..((((((((........(((......)))......................((((((....)))))))).))))))..))).......... ( -8.57 = -6.50 + -2.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:21 2011