| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,920,850 – 21,920,954 |
| Length | 104 |
| Max. P | 0.622335 |
| Location | 21,920,850 – 21,920,954 |
|---|---|
| Length | 104 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Shannon entropy | 0.43918 |
| G+C content | 0.40446 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -8.46 |
| Energy contribution | -8.56 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21920850 104 - 23011544 -UCGACGUUCUGCUAAUGGCUCCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-UGCCCGUUCUCAUCUGCAUCCGCGU -..((((....(.(((((((....).)))))).).))))...........((((..(((.((....)).)))..))))..-...............((....)).. ( -14.00, z-score = -0.23, R) >droYak2.chr2R 20237754 104 + 21139217 -UCGGCGUUCUGCUAAUGGCUCCGGUCCAUUAUCUCGUCAUAUUUGCUACGAAAUUUAAUUACUCUUAUUUAUUUUUUAA-UGCCCGUUCUCAUCUGCAUCCGCAU -...(((...(((..((((...(((..(((((..((((((....))..))))....(((......))).........)))-)).)))...))))..)))..))).. ( -15.30, z-score = -0.57, R) >droSec1.super_28 527426 104 - 873875 -UCGACGUUCUGCUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-UGCCCGUUCUCAUCUGCAUCCUUGU -..((((....(.(((((((....).)))))).).))))...........((((..(((.((....)).)))..))))..-......................... ( -16.00, z-score = -1.79, R) >droSim1.chr2L 21492306 104 - 22036055 -UCGACGUUCUGCUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-UGCCCGUUCUCAUCUGCAUCCUUGU -..((((....(.(((((((....).)))))).).))))...........((((..(((.((....)).)))..))))..-......................... ( -16.00, z-score = -1.79, R) >droAna3.scaffold_12943 2147244 104 + 5039921 -UCAGGGCUCUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-GUCCCCGCCUCGUCCGUAUUCGCAU -...((((.....(((((((....).))))))..................((((..(((.((....)).)))..))))..-...........)))).......... ( -16.40, z-score = -0.63, R) >dp4.chr4_group1 1309996 94 - 5278887 -UCGGGGCUCUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-UGCCC-UCAUCGUCGU--------- -..(((((..((.(((((((....).))))))..((((.((....)).)))).........................)).-.))))-).........--------- ( -19.30, z-score = -2.59, R) >droPer1.super_5 2917409 93 + 6813705 -UCGGGGCUCUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC-UGCCC--CAUCGUCGU--------- -..(((((..((.(((((((....).))))))..((((.((....)).)))).........................)).-.))))--)........--------- ( -22.60, z-score = -3.63, R) >droWil1.scaffold_181071 381248 92 - 1211509 UAAGGGCUCCUGGUAAUGGCCUCGGUCCAUUAUCUCGUCAUAUUUGGUACAAAAUUUAAUUACUCUUAUUUAUUUUUCGC-UGCCC--CCCGAAC----------- ...((((....(((((((((....).))))))))...........(((..(((((.(((......)))...)))))..))-)))))--.......----------- ( -17.70, z-score = -0.64, R) >droVir3.scaffold_12963 14841612 94 + 20206255 ----GGGCACUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUGCAG-UGCUCCG--UCCUGUCCCGC----- ----((((((((((((((((....).))))))..((((.((....)).))))........................))))-))).)).--...........----- ( -24.10, z-score = -3.38, R) >droMoj3.scaffold_6500 17232205 97 - 32352404 ----GGGCACUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAGUUGCCUCGGCUACUGCCCCGG----- ----((((((((.(((((((....).))))))..((((.((....)).)))).........................))).))))).(((....)))....----- ( -23.40, z-score = -2.58, R) >droGri2.scaffold_15113 87242 101 + 133687 ----GGGCACUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAG-UGCCACUCGCUUCGUCUAGCCCCAA ----.(((((((.(((((((....).))))))..((((.((....)).)))).........................)))-))))....(((......)))..... ( -25.00, z-score = -3.88, R) >consensus _UCGGGGCUCUGUUAAUGGCUUCGGUCCAUUAUCUCGUCAUGUUUGUUACGAAAUUUAAUUACUCUUAUUUAUUUUUCAC_UGCCCCUCCUCAUCUGCAUCC____ .............(((((((....).))))))..................((((..(((.((....)).)))..))))............................ ( -8.46 = -8.56 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:14 2011