| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,016,654 – 2,016,781 |
| Length | 127 |
| Max. P | 0.522795 |
| Location | 2,016,654 – 2,016,781 |
|---|---|
| Length | 127 |
| Sequences | 5 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 70.95 |
| Shannon entropy | 0.52054 |
| G+C content | 0.35505 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -11.59 |
| Energy contribution | -10.83 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2016654 127 + 23011544 ------UGGAAGGAUAUCUGAACCUAUCGAGGAAUACAAGUAAUGGUGGGAAAUACACGGCAUAUGCCAAUGUUACUGAAAAAGGUAUUGCAGU----UCUUUAGAAUAGGUGUCGCUUUAAAAUAAAAGGAUUUUA ------..((((((((((((...(((..(((.(((((.((((((.(((.......)))(((....)))...)))))).......))))).)...----))..)))..)))))))).))))................. ( -27.10, z-score = -1.09, R) >droEre2.scaffold_4929 2062945 119 + 26641161 UGGAAACUAAGGGAAGUCCGCGCCUAUUAAUAAAUACAAGUCAAGCUGCGAAAUAUAGGACAUAUGUCCAUGUCAUCGGCAAAACUAUUAUAGU------------AUAGUUGCUG------AAGAACAGGACUUUA .(....).....((((((((((.((..................)).)))........((((....)))).((((.((((((..(((((......------------))))))))))------).).)))))))))). ( -29.97, z-score = -2.21, R) >droYak2.chr2L 2001749 137 + 22324452 UGGAAACAAAAGGAGUUCCGCACCUUUUAUUAAAUACAAGUAACACUGAGAAAAAUGGAGCAGAUGCCAAUUUUAUAGGGAAAAGUAUUUAAGUAUAGUUGUUGAAAUAGAUGUUGCAAUUGAAGAACAGGACUUUG ((....))...(((((((...........((((((((........((...((((.(((........))).))))...)).....))))))))...(((((((.............))))))).......))))))). ( -20.14, z-score = 0.78, R) >droSec1.super_14 1963379 133 + 2068291 UGGAAACAUCAGAAAGUCUGAACCUAUCGAUGACUACAAGUAAUGCUGGGAAAUACAGGGCAUUUGCCAAUGUUAUCGAGAAAAGUAUUGUAGU----UCUUGAAAAUAGGUGUCGCUUUAAAUUAAAAGGACUUUA ((....))((((.....))))(((((((((.((((((((......((.((.((((...(((....)))..)))).)).)).......)))))))----).))))...)))))(((.((((......))))))).... ( -36.12, z-score = -3.19, R) >droSim1.chr2L 1986638 133 + 22036055 UGGAAACAUGAGGAAGUCUGAACCUAUCGAUGACUACAAGUAAUGCUGGGAAAUACAGGGCAUUUGCCAAUGUUAUCGAGAAAAGUAUUGUAGU----UCUUGAAAAUAGGUGUCGCUUUAAAUUAAAAGGACUUUA ((....))....((((((.(((((((((((.((((((((......((.((.((((...(((....)))..)))).)).)).......)))))))----).))))...))))).)).((((......)))))))))). ( -35.42, z-score = -2.92, R) >consensus UGGAAACAAAAGGAAGUCUGAACCUAUCGAUGAAUACAAGUAAUGCUGGGAAAUACAGGGCAUAUGCCAAUGUUAUCGAGAAAAGUAUUGUAGU____UCUUGAAAAUAGGUGUCGCUUUAAAAUAAAAGGACUUUA ............(((((((..((((((..................(((.......)))(((....)))......................................)))))).................))))))). (-11.59 = -10.83 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:55 2011