| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,865,412 – 21,865,505 |
| Length | 93 |
| Max. P | 0.553049 |
| Location | 21,865,412 – 21,865,505 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 68.21 |
| Shannon entropy | 0.49890 |
| G+C content | 0.31897 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -8.40 |
| Energy contribution | -9.03 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21865412 93 + 23011544 -----AUAUUAGCUACUUUCUAUUCAGGAUUGGGAUACAGAUUACAGAUUACAAUCAAGUCUCUACUAACAUUUAAAUUU-UUUUGGAAUGUUAGCUGA------ -----..................(((((((((..((.(........)))..))))).........(((((((((.((...-..)).)))))))))))))------ ( -15.40, z-score = -1.00, R) >droSim1.chr2L 21438388 96 + 22036055 -----AUUUUAGCCACUUACUUUUCAGGAUUGGGAGUAAGAUAU--GGUUACAAUCAAAUCUCUGCUACCAUUUAAAUUG-UUC-GUAAUGUUGGCUGAAAGCUG -----.((((((((((((((....(((...(((.((((((((.(--(((....)))).)))).)))).)))......)))-...-)))).).))))))))).... ( -24.50, z-score = -2.35, R) >droSec1.super_28 471236 96 + 873875 -----AUUUUAGCCACUUACUUUUCAGGAUUGGGAGUAAGAUAU--GGUUACAAUCAAAUCUCUGCUACCAUUUAAAUUG-UUC-GUAAUGUUGGCUGAAAGCUG -----.((((((((((((((....(((...(((.((((((((.(--(((....)))).)))).)))).)))......)))-...-)))).).))))))))).... ( -24.50, z-score = -2.35, R) >droEre2.scaffold_4845 19930902 101 - 22589142 AUAACUUUUUAGUUUUUUACCAUUCUCGAUUAGGAUAACAUUGU--GGCUA-AGUAAAAUCUAUACUACCACUCCAACUAAUUCGAUUAAUUUAGCUAAAGUUA- .((((((..(((((...........((((((((.........((--((...-((((.......)))).)))).....)))).)))).......)))))))))))- ( -14.01, z-score = -0.92, R) >consensus _____AUUUUAGCCACUUACUAUUCAGGAUUGGGAGAAAGAUAU__GGUUACAAUCAAAUCUCUACUACCAUUUAAAUUG_UUC_GUAAUGUUAGCUGAAAGCU_ ......((((((((((((((((((.......)))))))))......(((....)))....................................))))))))).... ( -8.40 = -9.03 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:12 2011