| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,833,647 – 21,833,738 |
| Length | 91 |
| Max. P | 0.792331 |
| Location | 21,833,647 – 21,833,738 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 74.31 |
| Shannon entropy | 0.53349 |
| G+C content | 0.63712 |
| Mean single sequence MFE | -36.65 |
| Consensus MFE | -20.92 |
| Energy contribution | -22.94 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21833647 91 + 23011544 GGAUUCCCUUUGGCCGCUGCUGCAGCGGCUGGGGCGGGUCCACGGCUGCCACUCCCACUCGCUAAUGAGGCGGCGGCUCCAUUUAAGCUUC ((((((.(((..(((((((...)))))))..))).))))))..(((((((.(((............)))..)))))))............. ( -41.00, z-score = -1.33, R) >droSim1.chr2L 21406797 91 + 22036055 GGAUUCCCUUUGGCCGCUGCUGCAGCGGCUGGGGCGGGUCCACGGCUUCCACUCCCACUGGCUAAUGAGGCGGCGGCUCCAUUUAAGCUUC ((((((.(((..(((((((...)))))))..))).))))))..(((((......((.(((.((....)).))).))........))))).. ( -37.64, z-score = -0.47, R) >droSec1.super_28 392317 91 + 873875 GGAUUCCCUUUGGCCGCUGCUGCAGCGGCUGGGGCGGGUCCACGGGUACCACUCCCACUGGCUAAUGAGGCGGCGGCUCCAUUUAAGCUUC ((((((.(((..(((((((...)))))))..))).))))))..(((.......)))...((((((((..((....))..))))..)))).. ( -40.30, z-score = -1.16, R) >droYak2.chr2R 20139504 91 - 21139217 GGAUUUCCUUUGGCCGCUGCUGCAGCUGCUGGGGCGGGUCCACGGCUGCCACUCCCACUGGCUAAUGAGGCGGCGGCUCCAUUUAAACUUC ((....))...((((((((((..((((..(((((..(((........)))..)))))..)))).....))))))))))............. ( -34.80, z-score = -0.32, R) >droEre2.scaffold_4845 19897681 91 - 22589142 GGAUUCCCUUUGGCCGCUGCUGCAGCGGCUGGUGCGGGUCCACGGCUGCCACUGCCACUGGCUAAUGAGGCGGUGGCUCCAUUUAAACUUC ((((((.(.(..(((((((...)))))))..).).))))))..((..(((((((((.(........).))))))))).))........... ( -44.70, z-score = -3.13, R) >droWil1.scaffold_181071 268076 85 + 1211509 GGGUUUCCUUUGGCCGCUGCUGCUGCAGCUGG------CCCACGGUUGCCCCUUCCUCUGCCAAAUGAGGCUUCUGCGCCAUUUAAGUUAC ((((..((...(((((((((....))))).))------))...))..))))...((((........))))..................... ( -31.60, z-score = -1.67, R) >triCas2.ChLG9 14014109 86 - 15222296 -CGCCUCAUGAUGACCUCGCCGUC-CGGCUUCAACCGGGCCUCGGUC-UCGCCGCUGAUCUCAUCCUCGUCGUCGCCUCCAGGGGUCUU-- -...........((((((...(((-(((......))))))...(((.-.((.((..(((...)))..)).))..)))....))))))..-- ( -26.50, z-score = 0.03, R) >consensus GGAUUCCCUUUGGCCGCUGCUGCAGCGGCUGGGGCGGGUCCACGGCUGCCACUCCCACUGGCUAAUGAGGCGGCGGCUCCAUUUAAGCUUC ((((((.(((..(((((((...)))))))..))).))))))..((...((.((.((.(........).)).)).))..))........... (-20.92 = -22.94 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:09 2011