| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,815,909 – 21,815,971 |
| Length | 62 |
| Max. P | 0.851241 |
| Location | 21,815,909 – 21,815,971 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.44231 |
| G+C content | 0.42204 |
| Mean single sequence MFE | -15.75 |
| Consensus MFE | -8.90 |
| Energy contribution | -9.02 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21815909 62 - 23011544 AUCUCUCUGAUGAUAGUGCACCUAUUGGG--AGGAGAAUUACGAGUGCAUAUAAAUUGGGGAAA ...((((..((....((((((...(((..--(......)..)))))))))....))..)))).. ( -15.20, z-score = -1.62, R) >droSim1.chr2L 21390310 62 - 22036055 AUCUCCCCGAUGCCAGUGCACCUUUUGGG--AGGAGAAUUACGAGUGCAUAUAAAUUGGGGAGA .((((((((((....((((((...(((..--(......)..)))))))))....)))))))))) ( -24.60, z-score = -3.61, R) >droSec1.super_28 376728 62 - 873875 AUCUCCCUGAUGCCAGUGCACCUAUUGGG--AGGAGAAUUACGAGUGCAUAUAAAUUGGGGAGA .((((((..((....((((((...(((..--(......)..)))))))))....))..)))))) ( -22.10, z-score = -2.87, R) >droYak2.chr2R 20119120 62 + 21139217 AUCUUUUUGAUUCUACUGCACCUAUUGAG--AGAAGAAUUACGAGUGCUUAUAAAUUGGAGAAC ...((((..(((.....((((...(((.(--(......)).))))))).....)))..)))).. ( -8.60, z-score = -0.44, R) >droEre2.scaffold_4845 19878442 62 + 22589142 AUCUCCCUGAUGCUAGUGCACCUAUUGGC--AGGAGAAUUACGAGUGCAUGUAAAUUGGAGAAA .(((((((..((((((((....)))))))--)..))..(((((......)))))...))))).. ( -16.60, z-score = -1.68, R) >droAna3.scaffold_12943 2049427 62 + 5039921 --GUUUCCCAUAAAAAUUUCCCCACUAGAGCGCGAAAAAUACGAGUGCGUAUAAAUUGAGCGAA --...........................((.(((...(((((....)))))...))).))... ( -7.40, z-score = -0.36, R) >consensus AUCUCCCUGAUGCUAGUGCACCUAUUGGG__AGGAGAAUUACGAGUGCAUAUAAAUUGGGGAAA ...((((((((....((((((.......................))))))....)))))))).. ( -8.90 = -9.02 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:06 2011