| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,804,551 – 21,804,641 |
| Length | 90 |
| Max. P | 0.731057 |
| Location | 21,804,551 – 21,804,641 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 70.90 |
| Shannon entropy | 0.52380 |
| G+C content | 0.49389 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -12.89 |
| Energy contribution | -12.84 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21804551 90 + 23011544 ---GUUCGGAACGAGUGCCAACAGUUGGCGACAGUCGCUGACG--------AAAAAGAAAGAAAGAA-GUUGUCGCAACAAA-UGUUGCCGUCUCUGAAUGGC ---((((((((((...((((.....))))((((.((.((..(.--------.....)..))...)).-..))))(((((...-.)))))))).)))))))... ( -25.40, z-score = -1.01, R) >droSim1.chr2L 21379187 90 + 22036055 ---GUUCCGGACGAGUGCCAAAAGUUGGCGACAGUCGCUGACG--------AAAAAGAAAGAAAGAA-GCUGUCGCAACAAA-UGUUGCUGUCUCUGAAUGGC ---((((.(((((...((((.....))))((((((..((..(.--------.........)..))..-))))))(((((...-.))))))))).).))))... ( -26.60, z-score = -1.55, R) >droSec1.super_28 365991 90 + 873875 ---GUUCGGGACGAGUGCCAAAAGUUGGCGACAGUCGCUGACG--------AACAAGAAAGAAAGAA-GCUGUCGCAACAAA-UGUUGCUGUCUCUGAAUGGC ---((((((((((...((((.....))))((((((..((..(.--------.........)..))..-))))))(((((...-.))))))))).))))))... ( -30.50, z-score = -2.30, R) >droYak2.chr2R 20108350 89 - 21139217 --GUUUUGGGACGAGUGCGAAGAGUUGGCGACAGUCGCUGCCG--------AAAAA--AACAAAGAA-GCUGUCGCGAAAAA-UUUUACUGUCUCUGAACUGU --((((.(((((.((((.(((...((.((((((((..((....--------.....--.....))..-)))))))).))...-)))))))))))).))))... ( -29.34, z-score = -2.54, R) >droAna3.scaffold_12943 2038719 100 - 5039921 ---GAGCGGGACAAAUGCCAACAGUUGGCGACAGUUGCCGUCGUUGCCGAAAAAAACAACCAGAAAAUGCUGUCGCGACAAAAUGUUUCAGUCUCUAAAUUGU ---(((((..(((...((((.....))))((((((.....((((((..........))))..))....)))))).........)))..).).)))........ ( -23.10, z-score = 0.09, R) >droPer1.super_5 2781822 90 - 6813705 AAGGAGGAAGGGAAUUGCCAACAGUUGGCGACAGUUGCCGUCG-------------CUGCCGAAAAAUGUUGUCGCGACAAAAUGUUGCUGUCGCUAGGCUGU .........((......)).(((((((((((((((.((.((((-------------(.(.(((......))).)))))).....)).)))))))))).))))) ( -29.90, z-score = -0.98, R) >droVir3.scaffold_12963 5521633 82 + 20206255 -----ACACGGCGACACCAAACAGUUGGCGACAGUUGCCGUCG-------------CUGCCGAA--AUGUUGUCGCGACAAAAUGUUGCUGUCGCUAA-CUGU -----....((.....))..(((((((((((((((.((.((((-------------(.((....--.....)).))))).....)).)))))))))))-)))) ( -33.30, z-score = -2.77, R) >consensus ___GUUCGGGACGAGUGCCAACAGUUGGCGACAGUCGCUGACG________AAAAACAAACAAAGAA_GCUGUCGCGACAAA_UGUUGCUGUCUCUGAAUUGU ........(((((...((((.....))))(((((...................................)))))(((((.....))))))))))......... (-12.89 = -12.84 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:06 2011