| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,804,327 – 21,804,419 |
| Length | 92 |
| Max. P | 0.711724 |
| Location | 21,804,327 – 21,804,419 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 87.10 |
| Shannon entropy | 0.24405 |
| G+C content | 0.36360 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -14.11 |
| Energy contribution | -14.22 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21804327 92 - 23011544 ---------------UGUUGGCAGCUUUGUCGCAGCCUCAGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUCAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((((..((....))...)))))))))...(((((......(((((((.....)))))))....))))).................--------- ( -16.90, z-score = -2.14, R) >droSim1.chr2L 21378964 92 - 22036055 ---------------UGUUGGCAGCUUUGUCGCAGCCUCCGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUCAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((.((((..(((((....))))))))).............(((((((.....)))))))..))))))).................--------- ( -16.00, z-score = -1.96, R) >droSec1.super_28 365768 92 - 873875 ---------------UGUUGGCAGCUUUGUCGCAGCCUCCGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUCAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((.((((..(((((....))))))))).............(((((((.....)))))))..))))))).................--------- ( -16.00, z-score = -1.96, R) >droYak2.chr2R 20108131 92 + 21139217 ---------------UGUUGGCAGCUUUGUCGCAGGCUCCGCUGUCAGAAAUUGAUUUACCGUUUUAAUUUCAAGUUAAAAAGCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((((((...((.(((......))).((((((((.........))))))))..))...))))))))))).................--------- ( -24.10, z-score = -3.56, R) >droEre2.scaffold_4845 19865219 92 + 22589142 ---------------UGUUGGCAGCUUUGUCGCAGCCUCCGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUCAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((.((((..(((((....))))))))).............(((((((.....)))))))..))))))).................--------- ( -16.00, z-score = -1.96, R) >droAna3.scaffold_12943 2038469 92 + 5039921 ---------------UGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAGUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ---------------..(((((((.(((...(((((....)))))...)))...........(((((((.....)))))))..))))))).................--------- ( -16.60, z-score = -2.05, R) >dp4.chr4_group1 1174643 107 - 5278887 ACGUUGAUGCUGUGCUGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAGUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ...(((((((.(.(((((.(((......))))))))..).)).)))))...(((((......(((((((.....)))))))....))))).................--------- ( -20.30, z-score = -0.96, R) >droPer1.super_5 2781529 107 + 6813705 ACGUUGAUGCUGUGCUGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAGUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC--------- ...(((((((.(.(((((.(((......))))))))..).)).)))))...(((((......(((((((.....)))))))....))))).................--------- ( -20.30, z-score = -0.96, R) >droWil1.scaffold_181071 234561 101 - 1211509 ---------------UGUUGGCAGCCUUGUAGCAGCCUCUGCUGUCAAAAAUUGAUUUACCGAUUUAAUUUUAAGUUUUAAACCUGUCAAAAAUAAAUCAUUCAAUCGUUCGCUGG ---------------......((((.(((((((((...)))))).))).....((((....((((((.((((.((........))...)))).))))))....))))....)))). ( -17.90, z-score = -0.84, R) >droVir3.scaffold_12963 5521341 101 - 20206255 ---------------UGUUGGCAGCCUUGUCGCAGUUUCUACUGUCAAAAAUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUCGCUCGCUCG ---------------....((((((.(((..(((((....))))))))...(((((......(((((((.....)))))))....))))).................))).))).. ( -15.40, z-score = -1.24, R) >droMoj3.scaffold_6500 15274461 105 + 32352404 -----------UGGCUGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUCGCUCGCAGC -----------..(((((.(((....(((..(((((....))))))))...(((((......(((((((.....)))))))....))))).................))).))))) ( -22.40, z-score = -1.42, R) >droGri2.scaffold_15252 8136302 101 - 17193109 ---------------UGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAGUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUCGCUCGCUCG ---------------....(((((((((...(((((....)))))...)))(((((......(((((((.....)))))))....))))).................))).))).. ( -18.10, z-score = -1.47, R) >consensus _______________UGUUGGCAGCCUUGUCGCAGCCUCCGCUGUCAAAAAUUGAUUUACCGUUUUAAUUUUAAGUUAAAAACCUGUCAAAAAUAAAUCAUUCAAUC_________ .................(((((((..(((..(((((....))))))))..............(((((((.....)))))))..))))))).......................... (-14.11 = -14.22 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:05 2011