| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,787,406 – 21,787,521 |
| Length | 115 |
| Max. P | 0.978231 |
| Location | 21,787,406 – 21,787,521 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.83 |
| Shannon entropy | 0.31264 |
| G+C content | 0.47979 |
| Mean single sequence MFE | -40.13 |
| Consensus MFE | -29.31 |
| Energy contribution | -30.78 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21787406 115 + 23011544 GUAGGUGGUGGUCGGCAGGGUAUUCCUUUCCUGCUUCGGGUUUCCGAUGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGAGCUAAAAGUUUUGCAAAU ((((((((..((((((((((........)))))))((((....)))).)))))))))))..(((((.((((((....))))))(((.....))).)))))............... ( -39.70, z-score = -2.20, R) >droSim1.chr2L 21360854 115 + 22036055 GUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUACUCAGCUUAGUUGUAAAUUUAGAACAACAAGCAAUUGGAGCUAAAAGUUUUGCAAAU ((((((((..(((.(((((..(....)..)))))(((((....))))))))))))))))...((((.(((((.........)))))))))....(((((.....)))))...... ( -40.60, z-score = -2.54, R) >droSec1.super_28 347224 115 + 873875 GUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUACUCAGCUUAGUUGUAAAUUUAGAACAACAAGCAAUUGGAGCUAAAAGUUUUGCAAAU ((((((((..(((.(((((..(....)..)))))(((((....))))))))))))))))...((((.(((((.........)))))))))....(((((.....)))))...... ( -40.60, z-score = -2.54, R) >droEre2.scaffold_4845 19847678 115 - 22589142 GUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGAUUUCCGACGGCCCGACUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGAGCGAAAAGUUUUGCAAAU ((((((.(.((((((((((..(....)..))))).((((....)))))))))).)))((((.((((.((((((....))))))...)))).....)))).........))).... ( -41.50, z-score = -2.66, R) >droAna3.scaffold_12943 2023992 111 - 5039921 ----GAGGGGGGGAGUGGGAGUGGGCUUGGGGGCGAAGGAUUCCCAUAGCCUUGACUGCUCAGUUCAGUUGUGAAUUUACAACAACCAGAAGCCGGAGCACAAAGUUUUUCAAAU ----((((((((((.(((((((((((((((((((....).)))))).)))))..))).)))).))).((((((....))))))..))....((....)).......))))).... ( -35.10, z-score = -0.84, R) >droYak2.chr2R 20087269 115 - 21139217 GUAGGUGAUGGUCGGCAGGGGAUUCCUUUUCUGCUUCGGUUUUCCGACGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUAGAGCGAAAAGUUUUGAAAAU (((((((..(((((((((..((....))..)))).((((....))))))))))))))))...((((.((((((....))))))...))))..(((((((.....))))))).... ( -43.30, z-score = -3.87, R) >consensus GUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGAGCUAAAAGUUUUGCAAAU (((((((..(((((((((((((....)))))))))((((....)))).)))))))))))...((((.(((((.........)))))))))....(((((.....)))))...... (-29.31 = -30.78 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:03 2011