Locus 2740

Sequence ID dm3.chr2L
Location 21,783,703 – 21,783,810
Length 107
Max. P 0.971032
window3769 window3770

overview

Window 9

Location 21,783,703 – 21,783,804
Length 101
Sequences 8
Columns 103
Reading direction forward
Mean pairwise identity 60.88
Shannon entropy 0.78232
G+C content 0.45963
Mean single sequence MFE -28.09
Consensus MFE -9.52
Energy contribution -10.25
Covariance contribution 0.73
Combinations/Pair 1.57
Mean z-score -1.84
Structure conservation index 0.34
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.84
SVM RNA-class probability 0.971032
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21783703 101 + 23011544
-CGAACCUCGCUUUAGCCAACUCCAUGUUCA-CUUCCGUCCUCAGGUAGUUGUAGGUGCAAUUGCUGAAGGACGUCAGGUUUAGGUUGCUGGCGCAAAAGUCU
-........(((((.((((.(.((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..))))..).))))...))))).. ( -32.90, z-score =  -1.87, R)
>droSim1.chr2L 21357372 101 + 22036055
-CGUACCUCGCUUUAGCAAACUCCAUAUUCA-CUUCUGUCCUGAGGUAGUUGUAGGUGCAAUUGCUAAAGGACGUCAGGUUUAGGUUGCUGCGGCAAAAGUCU
-........(((.((((((...((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..)))))))))).)))........ ( -31.30, z-score =  -2.00, R)
>droSec1.super_28 343741 101 + 873875
-CGUACCUCGCUUUAGCAAACUCCAUAUUCA-CUUCUGUCCUGAGGUAGUUGUAGGUGCAAUUGCUAAAGGACGUCAGGUUUAGGUUGCUGCGGCAAAAGUCU
-........(((.((((((...((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..)))))))))).)))........ ( -31.30, z-score =  -2.00, R)
>droYak2.chr2R 20081945 101 - 21139217
-CGUACCUUGCUUUAGCAAGCUCUAUAUUUA-CUUCCGUUCUCAGGUAGUUAUAUUCGCAUUUGCUGAAGGAUGACAUGUCCAGGUUGCUGGCGCACAAGUCU
-.........(((((((((((...((((..(-((.((.......)).))).))))..))..)))))))))...(((.(((((((....))))...))).))). ( -25.30, z-score =  -0.56, R)
>droEre2.scaffold_4845 19843636 101 - 22589142
-CGUACCUCGCUCUAGCAAGCACUAUAUUCA-CUUUCGUCCUCAGGUAGUUGUGUUCGCAAUUGCUGAAGGAUGACAAGUUCAGAUUGCUGGCGCAAAAGUCU
-........((.(((((((...((......(-((((((((((..(((((((((....)))))))))..))))))).))))..)).))))))).))........ ( -33.80, z-score =  -2.97, R)
>droAna3.scaffold_12943 2021146 101 - 5039921
ACAACUUUGAGCUUAUCUGGUUCU-UGACGA-CUUGCGUUCUCAGGUAGUUGAUAUCAAAACUGCUGAAGGACGAGAUUGCCAGGUUGCUCUUACAAUAGUCU
........((((..(((((((..(-(.....-....((((((..(((((((........)))))))..)))))).))..))))))).))))............ ( -30.50, z-score =  -2.11, R)
>dp4.chr4_group1 1151706 84 + 5278887
-------------------GUUCUAUUGUCAUCUCGCGUCUUGAGAUACUUGCCACUCUCAUUAUGGAUGCUCUCCACAAAUCCCUCACUGGGACAGAUGUAA
-------------------..........(((((.(((((((((((..........)))))....))))))..........((((.....)))).)))))... ( -19.80, z-score =  -1.58, R)
>droPer1.super_5 2757695 84 - 6813705
-------------------GUUCUAUUGUCAUCUCGCGUCUUGAGAUACUUGCCACUCUCAUUAUGGAUGCUCUCCACAAAUCCCUCACUGGGACAGAUGUAA
-------------------..........(((((.(((((((((((..........)))))....))))))..........((((.....)))).)))))... ( -19.80, z-score =  -1.58, R)
>consensus
_CGUACCUCGCUUUAGCAAGCUCUAUAUUCA_CUUCCGUCCUCAGGUAGUUGUAAGUGCAAUUGCUGAAGGACGACAGGUUUAGGUUGCUGGGGCAAAAGUCU
....................................((((((..((((((((......))))))))..))))))............................. ( -9.52 = -10.25 +   0.73)

alignment

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secondary structure

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dotplot

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Window 0

Location 21,783,709 – 21,783,810
Length 101
Sequences 8
Columns 103
Reading direction forward
Mean pairwise identity 62.24
Shannon entropy 0.75757
G+C content 0.45532
Mean single sequence MFE -28.38
Consensus MFE -9.52
Energy contribution -10.25
Covariance contribution 0.73
Combinations/Pair 1.57
Mean z-score -1.83
Structure conservation index 0.34
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.67
SVM RNA-class probability 0.959463
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21783709 101 + 23011544
-UCGCUUUAGCCAACUCCAUGUUCA-CUUCCGUCCUCAGGUAGUUGUAGGUGCAAUUGCUGAAGGACGUCAGGUUUAGGUUGCUGGCGCAAAAGUCUCUACGA
-..(((((.((((.(.((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..))))..).))))...)))))........ ( -32.90, z-score =  -1.92, R)
>droSim1.chr2L 21357378 101 + 22036055
-UCGCUUUAGCAAACUCCAUAUUCA-CUUCUGUCCUGAGGUAGUUGUAGGUGCAAUUGCUAAAGGACGUCAGGUUUAGGUUGCUGCGGCAAAAGUCUCUACGA
-..(((.((((((...((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..)))))))))).))).............. ( -31.30, z-score =  -1.91, R)
>droSec1.super_28 343747 101 + 873875
-UCGCUUUAGCAAACUCCAUAUUCA-CUUCUGUCCUGAGGUAGUUGUAGGUGCAAUUGCUAAAGGACGUCAGGUUUAGGUUGCUGCGGCAAAAGUCUCUACGA
-..(((.((((((...((.((..(.-((..((((((..(((((((((....)))))))))..))))))..)))..)))))))))).))).............. ( -31.30, z-score =  -1.91, R)
>droYak2.chr2R 20081951 101 - 21139217
-UUGCUUUAGCAAGCUCUAUAUUUA-CUUCCGUUCUCAGGUAGUUAUAUUCGCAUUUGCUGAAGGAUGACAUGUCCAGGUUGCUGGCGCACAAGUCUCUACGA
-...(((((((((((...((((..(-((.((.......)).))).))))..))..)))))))))((.(((.(((((((....))))...))).)))))..... ( -26.00, z-score =  -0.76, R)
>droEre2.scaffold_4845 19843642 101 - 22589142
-UCGCUCUAGCAAGCACUAUAUUCA-CUUUCGUCCUCAGGUAGUUGUGUUCGCAAUUGCUGAAGGAUGACAAGUUCAGAUUGCUGGCGCAAAAGUCUCUACGA
-..((.(((((((...((......(-((((((((((..(((((((((....)))))))))..))))))).))))..)).))))))).)).............. ( -33.80, z-score =  -2.73, R)
>droAna3.scaffold_12943 2021152 101 - 5039921
UUGAGCUUAUCUGGUUCU-UGACGA-CUUGCGUUCUCAGGUAGUUGAUAUCAAAACUGCUGAAGGACGAGAUUGCCAGGUUGCUCUUACAAUAGUCUAUGCGG
..((((..(((((((..(-(.....-....((((((..(((((((........)))))))..)))))).))..))))))).)))).................. ( -30.50, z-score =  -1.74, R)
>dp4.chr4_group1 1151706 90 + 5278887
-------------GUUCUAUUGUCAUCUCGCGUCUUGAGAUACUUGCCACUCUCAUUAUGGAUGCUCUCCACAAAUCCCUCACUGGGACAGAUGUAAUUUCUC
-------------.....((((.(((((.(((((((((((..........)))))....))))))..........((((.....)))).)))))))))..... ( -20.60, z-score =  -1.90, R)
>droPer1.super_5 2757695 90 - 6813705
-------------GUUCUAUUGUCAUCUCGCGUCUUGAGAUACUUGCCACUCUCAUUAUGGAUGCUCUCCACAAAUCCCUCACUGGGACAGAUGUAAUUCCUC
-------------.....((((.(((((.(((((((((((..........)))))....))))))..........((((.....)))).)))))))))..... ( -20.60, z-score =  -1.81, R)
>consensus
_UCGCUUUAGCAAGCUCUAUAUUCA_CUUCCGUCCUCAGGUAGUUGUAAGUGCAAUUGCUGAAGGACGACAGGUUUAGGUUGCUGGGGCAAAAGUCUCUACGA
..............................((((((..((((((((......))))))))..))))))................................... ( -9.52 = -10.25 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:02 2011