| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,779,421 – 21,779,477 |
| Length | 56 |
| Max. P | 0.543100 |
| Location | 21,779,421 – 21,779,477 |
|---|---|
| Length | 56 |
| Sequences | 12 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 91.04 |
| Shannon entropy | 0.19043 |
| G+C content | 0.38930 |
| Mean single sequence MFE | -12.02 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543100 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 21779421 56 - 23011544 --GGCAAAAGCAAUCAGAACUCUAAAUCUGAUGUACACCGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........)))))))).....((.....))))........ ( -10.40, z-score = -1.18, R) >droSim1.chr2L 21352415 56 - 22036055 --GGCAAAAGCAAUCAGAACUCUAAAUCUGAUGUACUCCGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........)))))))).....((.....))))........ ( -10.40, z-score = -1.05, R) >droSec1.super_28 338925 56 - 873875 --GGCAAAAGCAAUCAGAACUCUAAAUCUGAUGUACUCCGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........)))))))).....((.....))))........ ( -10.40, z-score = -1.05, R) >droYak2.chr2R 20073605 56 + 21139217 --GGCAAAAGCAAUCAGAACUCUAAAUCUGAUGUACACCGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........)))))))).....((.....))))........ ( -10.40, z-score = -1.18, R) >droEre2.scaffold_4845 19836779 56 + 22589142 --GGCAAAAGCAAUCAGAACUCUAAAUCUGAUGUACACCGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........)))))))).....((.....))))........ ( -10.40, z-score = -1.18, R) >droAna3.scaffold_12943 2016921 58 + 5039921 GAUGCAAAAGCAAUCAGAAUACUAAAUCUGAUGUACGCCGCUAAUUGCGCAUAGAUUA .((((....((.((((((........))))))....)).((.....))))))...... ( -12.70, z-score = -1.62, R) >dp4.chr4_group1 1145459 56 - 5278887 --GGCGAAGGCAAUCAGAAUACUAAAUCUGAUGUACGCCGCUAAUUGCGCAUAGAUUA --((((...(((.(((((........)))))))).))))((.....)).......... ( -15.90, z-score = -2.27, R) >droPer1.super_5 2751516 56 + 6813705 --GGCGAAGGCAAUCAGAAUACUAAAUCUGAUGUACGCCGCUAAUUGCGCAUAGAUUA --((((...(((.(((((........)))))))).))))((.....)).......... ( -15.90, z-score = -2.27, R) >droWil1.scaffold_181071 1007254 53 + 1211509 -----AAAUGCAAUCAGAAUACUAAAUCUGAUAUACGUCGCUAAUUGCGCAUAUAUUA -----..((((.((((((........)))))).......((.....))))))...... ( -11.60, z-score = -2.56, R) >droVir3.scaffold_12963 14658571 56 + 20206255 --GGCAAAUGCAAUCAGAACACUAAAUCUGAUGUACGCAGCUAAUUGCGCAUAGAUUA --.....((((.((((((........))))))....((((....))))))))...... ( -12.40, z-score = -1.28, R) >droMoj3.scaffold_6500 17052223 56 - 32352404 --GGCAAAGGCAAUCAGAACACUAAAUCUGAUGUACGCAGCUAAUUGCGCAUAGAUUA --.((....(((.(((((........))))))))..((((....))))))........ ( -11.30, z-score = -0.86, R) >droGri2.scaffold_15252 9032984 52 + 17193109 ------AAUGCAAUCAGAACACUAAAUCUGAUGUACGCAGCUAAUUGCGCAUAGAUUA ------.((((.((((((........))))))....((((....))))))))...... ( -12.40, z-score = -1.94, R) >consensus __GGCAAAAGCAAUCAGAACACUAAAUCUGAUGUACGCCGCUAAUUGCGCAUAGAUUA .........((.((((((........)))))).......((.....))))........ ( -9.68 = -9.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:57:01 2011