Locus 2736

Sequence ID dm3.chr2L
Location 21,756,881 – 21,756,983
Length 102
Max. P 0.602626
window3765

overview

Window 5

Location 21,756,881 – 21,756,983
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 79.43
Shannon entropy 0.26108
G+C content 0.38688
Mean single sequence MFE -16.60
Consensus MFE -14.30
Energy contribution -14.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.23
SVM RNA-class probability 0.602626
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 21756881 102 + 23011544
AAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUUAAUUCUGACGAAGGCCAAAAACGAGAACGCAAUGUACAUAUGUACAUAAUAUACAUACAUAUGU
...(((((((.....(((((...(((.((....))))).....))))).))))))).................(((((((((...........))))))))) ( -21.20, z-score =  -1.90, R)
>droSim1.chr2L 21300831 78 + 22036055
AAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAACACA---UACAUAUGC---------------------
...(((((((....((.........))((.(((((......))))).))))))))).............---.........--------------------- ( -14.30, z-score =  -1.05, R)
>droSec1.super_28 317505 78 + 873875
AAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAACACA---UGCAUAUGC---------------------
...(((((((....((.........))((.(((((......))))).))))))))).............---.........--------------------- ( -14.30, z-score =  -0.44, R)
>consensus
AAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAACACA___UACAUAUGC_____________________
...(((((((....((.........))((.(((((......))))).))))))))).............................................. (-14.30 = -14.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:58 2011