| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,727,901 – 21,727,966 |
| Length | 65 |
| Max. P | 0.930197 |
| Location | 21,727,901 – 21,727,966 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 62.72 |
| Shannon entropy | 0.61167 |
| G+C content | 0.37111 |
| Mean single sequence MFE | -14.62 |
| Consensus MFE | -4.59 |
| Energy contribution | -5.03 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.78 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21727901 65 - 23011544 AAAGCGGCGUAUCAGGUCACAUCAUAGUGG-AAAAAGUAGCCAUUGUACAU--UCAGUACAUUCGUUU .(((((((........((((......))))-........)))..(((((..--...)))))...)))) ( -14.29, z-score = -2.99, R) >droEre2.scaffold_4845 19788782 68 + 22589142 AGGGCGACGUAUAAUAUUACGUCAUGGUGGAUAAAAGUAUCCGCUAUACAUUGUCAGUUCAGUGUUUU .....((((((......))))))((((((((((....))))))))))((((((......))))))... ( -23.90, z-score = -4.81, R) >droSim1.chr2L 21277519 68 - 22036055 AAAGCGGCGUAUCAGGUCACAUCAUAGUGGUGUAAAGUAGCCAUUGUACAUUGUCAGUACAUUCGUUU .((((((.((((...(.((....((((((((........))))))))....)).).))))..)))))) ( -13.90, z-score = -1.52, R) >droMoj3.scaffold_6500 14889885 62 - 32352404 AAAACAUCAUAUC---UCUAGCUUUUGUGA-UUAACGUGAUCUCUACGUAU--ACAAGACAUUUUUUA .............---....(.(((((((.-...(((((.....))))).)--)))))))........ ( -6.40, z-score = -0.35, R) >consensus AAAGCGGCGUAUCAGGUCACAUCAUAGUGG_UAAAAGUAGCCACUAUACAU__UCAGUACAUUCGUUU .......................(((((((((......)))))))))..................... ( -4.59 = -5.03 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:55 2011