| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,708,043 – 21,708,164 |
| Length | 121 |
| Max. P | 0.510254 |
| Location | 21,708,043 – 21,708,164 |
|---|---|
| Length | 121 |
| Sequences | 4 |
| Columns | 130 |
| Reading direction | reverse |
| Mean pairwise identity | 64.48 |
| Shannon entropy | 0.58300 |
| G+C content | 0.39431 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -9.86 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21708043 121 - 23011544 UUGCAGAAGAGAAGUCGAAAAGAACGCACAUAAGACAAGAGUUGUGAAAAAGCGGAUAAGUCGGUCG---------GAAACGAUUAGUCAAGUCGGACAGUCGUUGACAAUGGAAGCAUUGUUGCGUGAA .......................((((......(((..((.((((..........)))).))(((((---------....))))).(((......))).)))...(((((((....)))))))))))... ( -28.10, z-score = -0.97, R) >droSim1.chrU 7936824 130 + 15797150 UUGCAGAAGAGAAGUCGAAAAGAACGCACAUAAGACAAGAGUUGUGAAAAAGCGGAUAAGUUGGUCGGUUUUUUCAGGAACGAUUAGUCAAGUCGGACAGUCGUUGAAAGUAGAAGUAGUGUUGCGGGAA ........................((((.(((..((......(.(((((((((.(((......))).))))))))).)(((((((.(((......))))))))))..........))..))))))).... ( -30.10, z-score = -1.82, R) >droSec1.super_67 3571 129 + 170185 UUGAAAUAGAGAAGUCGAAAAGAACGCGCAUAAGUCAAGAGUUGUGGAAAAGCGAAUAAGUCGGUCGG-UUUUUCAGCAACGAUUAGUCAAGUCAGACAGUCGUUGAAAGUAGAAGUAGUGUUUCGUGAA ..(((((((((((..(((...((.(((.(((((.(....).))))).....)))......))..))).-.)))))..((((((((.(((......))))))))))).............))))))..... ( -32.10, z-score = -2.76, R) >droGri2.scaffold_14624 1949954 115 - 4233967 -----CUACACUUGCCGAAAAAAUUGCACUACAUUUCACA--UAUAACUCUGAAUAUUAAACGAUUCA-AAUUUCAAGUAGAAUUGUUC---UCGGCAUAUUCUGGA----AUAAUCACCGUUUAGUUAA -----(((.((.((((((................((((..--........)))).....((((((((.-...........)))))))).---))))))......((.----.......)))).))).... ( -15.90, z-score = -0.57, R) >consensus UUGCAGAAGAGAAGUCGAAAAGAACGCACAUAAGACAAGAGUUGUGAAAAAGCGGAUAAGUCGGUCGG_UUUUUCAGGAACGAUUAGUCAAGUCGGACAGUCGUUGAAAGUAGAAGCAGUGUUGCGUGAA ..((((.........(((......(((........................)))......)))...............(((((((.(((......))))))))))................))))..... ( -9.86 = -9.23 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:54 2011