| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,685,236 – 21,685,324 |
| Length | 88 |
| Max. P | 0.960408 |
| Location | 21,685,236 – 21,685,324 |
|---|---|
| Length | 88 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 59.17 |
| Shannon entropy | 0.66535 |
| G+C content | 0.35629 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -8.43 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21685236 88 + 23011544 GUAUAGGAAACUUUAUAUGUGUACCGUCGAAGAGUGCAUAUUUU-AGGUUUCGGACAAAAUC-------------CCAAUAAAGAUUUAAUAAGAAUACGAA ((((..(((((((...(((((((((......).))))))))...-)))))))(((.....))-------------)...................))))... ( -19.90, z-score = -2.73, R) >droSim1.chr2L 21240970 101 + 22036055 GUAUAUUAAACUCUACAUGUGUACCGACGCAGAGUGCAUAUUUU-AGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAUACGAA ((((..(((((.(((.(((((((((......).))))))))..)-)))))))((((...(((......)))))))....................))))... ( -20.10, z-score = -1.78, R) >droSec1.super_28 227640 101 + 873875 GUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUU-AGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAUACGAA ((((..(((((((...(((((((((......).))))))))...-)))))))((((...(((......)))))))....................))))... ( -20.90, z-score = -2.02, R) >droAna3.scaffold_12916 9281352 82 + 16180835 ----------------GUAAAGGUUUUAAGAGAACCCAGGCCCCCAGACUCCAUCUUAGAUCCGCUU----GACCCCAAUAACCUGAUCAUAAAUAUGGCAG ----------------.....(((((.....)))))(((((....(((.....))).......))))----)...........(((.((((....))))))) ( -10.30, z-score = 0.70, R) >consensus GUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUU_AGGUUUAGGUCGAAAUCUAAUU____GACCCCAAUAAAGAUUUAAUAAGAAUACGAA ......(((((((...(((((((((......).))))))))....))))))).................................................. ( -8.43 = -9.05 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:51 2011