| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,640,807 – 21,640,903 |
| Length | 96 |
| Max. P | 0.854053 |
| Location | 21,640,807 – 21,640,903 |
|---|---|
| Length | 96 |
| Sequences | 13 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 64.33 |
| Shannon entropy | 0.73798 |
| G+C content | 0.55663 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -11.31 |
| Energy contribution | -10.58 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21640807 96 - 23011544 ACUCGUUCCGUAGGCACAGCAUCUCGCAUUUGUUCCACAAACGAUGCGGGAAGUAGGUGCUCUGCGGUGACCAUCCCCUCCACCACCAAGUUUAUA--------------- ....(((((((((((((.((.(((((((((.(((.....)))))))))))).))..)))).)))))).))).........................--------------- ( -31.40, z-score = -2.72, R) >apiMel3.GroupUn 11283458 89 - 399230636 ACUAUUUAAAUAGUAUUAGUACUGCAUUUUUGCU-GAUAAUCGAAUAAAUCGUUUACAGUUUCCAUAUUACACGAUUUUCUAUUUACAGU--------------------- ......(((((((((((((((.........))))-)))).......(((((((.((............)).))))))).)))))))....--------------------- ( -11.30, z-score = -0.68, R) >droGri2.scaffold_15252 15524396 75 + 17193109 ACACGUUCGGUUGGCACCGCGUCCCGCAUUUGCUCCACAAAGGAUUCGGGAAGUAGGUGCUCGGCGGUGACCACC------------------------------------ ........(((.((((((((.....(((((((((((............)).)))))))))...)))))).)))))------------------------------------ ( -27.30, z-score = -0.78, R) >droMoj3.scaffold_6500 11501398 75 - 32352404 ACACGCUCGGUGGGCACCGCUUCACGCAUCUGUUCCACAAACGAUUCAGGCAGCAGGUGCUCGGCGGUGGCCACC------------------------------------ ........(((((.(((((((....(((((((((((............)).)))))))))..))))))).)))))------------------------------------ ( -37.50, z-score = -4.40, R) >droVir3.scaffold_12963 58867 75 - 20206255 ACACGUUCGGUGGGCACCGCCUCGCGCAUUUGCUCCACAAACGAUUCGGGCAGCAGGUGCUCGGCGGUGACAACC------------------------------------ ........(((...(((((((..(.(((((((((((............)).))))))))).))))))))...)))------------------------------------ ( -31.40, z-score = -1.91, R) >droWil1.scaffold_180772 216791 111 + 8906247 UCACGCUCUGUGGGCACUGCAUCGCGCAUUUGUUCGACAAAUGAUUCCGGUAGCAGGUGUUCAGCAGUUGCCAUCUCCUCUUCCAAUAUCUGACCACCAUCCUCGACCAUU ....((.(((((((((((((((((..((((((.....))))))....)))).))).))))))).)))..))........................................ ( -25.70, z-score = -0.05, R) >droSec1.super_28 154323 90 - 873875 ACUCGUUCCGGGGGCACAGCUUCGCGCAUUUGUUCCACAAACGAUGCGGGAAGUAGGUGCUCUGCGGUGACCAUCC------CCUCCAAGUUUAUA--------------- ....(((((((((((((.(((((.((((((.(((.....))))))))).)))))..))))))).))).))).....------..............--------------- ( -31.90, z-score = -1.63, R) >droYak2.chr2R 19938831 96 + 21139217 ACUCGUUCCGGGGGCACAGCGUCGCGCAUUUGUUCCACAAACGAUGCAGGAAGUAAGUGCUCUGCUGUGAUAAUCCCCUCCAUCUCCACGUUUAUA--------------- .........((((((((((((..(.(((((((((((............)))).))))))).))))))))....)))))..................--------------- ( -27.20, z-score = -1.04, R) >droEre2.scaffold_4845 19713780 96 + 22589142 ACUCGUUCCGGGGGCACAGCCUCGCGCAUUUGUUCCACAAAUGAUGCCGGAAGUAGGUGUUCUGCGGUAACAAUCGCCUCCAUCUCCACGGCUAUA--------------- ..(((((((((((((...)))))(((((((((.....)))))).))))))).(.(((((....(((((....)))))...))))).))))).....--------------- ( -30.20, z-score = -0.98, R) >droAna3.scaffold_12916 9254305 96 - 16180835 ACACGUUCUGUAGGUACUGCCUCGCGCAUUUGCUCCACAAACGAUGCGGGCAGCAGGUGCUCGGCUGUGACCACCCCUGAAUCCUCCACGUCCACU--------------- ..((((....((((..(((((.(((((.((((.....)))).).)))))))))..((((.(((....))).))))))))........)))).....--------------- ( -25.90, z-score = 0.60, R) >droSim1.chr2L 21174938 96 - 22036055 ACUCGUUCCGGGGGCACAGCUUCGCGCAUUUGUUCCACAAACGAUGCGGGAAGUAGGUGCUCUGCGGUGACCAUCCCCUCCACCUCCAAGUUUAUA--------------- ....(((((((((((((.(((((.((((((.(((.....))))))))).)))))..))))))).))).))).........................--------------- ( -31.90, z-score = -1.23, R) >dp4.chr4_group1 4049127 102 - 5278887 ACACGUUCUGUGGGUACUGCAUCGCGCAUUUGCUCCACAAACGAUUCGGGCAGCAGGUGCUCGGCGGUGACCGCCUCCGCGCCGGCCACAUCCACAUCCACA--------- ....((..(((((((...((..((((((((((((((............)).)))))))))..(((((...)))))...)))...))...)))))))...)).--------- ( -37.70, z-score = -0.97, R) >droPer1.super_5 5593054 102 + 6813705 ACACGUUCUGUGGGUACUGCAUCGCGCAUUUGCUCCACAAACGAUUCGGGCAGCAGGUGCUCGGCGGUGACCGCCUCCGCGCCGGCCACAUCCACAUCCACA--------- ....((..(((((((...((..((((((((((((((............)).)))))))))..(((((...)))))...)))...))...)))))))...)).--------- ( -37.70, z-score = -0.97, R) >consensus ACACGUUCCGUGGGCACAGCAUCGCGCAUUUGUUCCACAAACGAUUCGGGAAGUAGGUGCUCGGCGGUGACCACCCCCUC_ACCUCCACGU_UAUA_______________ ..............(((.((.....(((((((((((............)).)))))))))...)).))).......................................... (-11.31 = -10.58 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:43 2011