| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,611,585 – 21,611,689 |
| Length | 104 |
| Max. P | 0.937950 |
| Location | 21,611,585 – 21,611,689 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 61.36 |
| Shannon entropy | 0.52366 |
| G+C content | 0.43189 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -13.89 |
| Energy contribution | -13.02 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.937950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21611585 104 - 23011544 GAAGUACCACAGGAUCAUUUUCUGGACAAGGUGAUUAACGACUACUUAGCAACAGAAAACUUCGA---------------AGUGAAGCCA-----GCUCCUCCAGUCGCAGCUAGUGGAAAUGC ......((((.((....(((((((..(.(((((.........))))).)...)))))))((((..---------------...))))))(-----(((.(.......).)))).))))...... ( -20.00, z-score = 0.96, R) >droSim1.chr3h_random 976517 124 - 1452968 GGAGUUCCACAGGAUCAUCUUCUGGACAAGAUGUUCAUGAAAUAUUUUGAAAUAGAAAACUUCGGAAACUAUCUGCAACUAGUGAAGCCAACUUUACUUCACUAGUUGCAGAUAGUGGAUAUUC (((((((((.(((.....))).))))(((((((((.....))))))))).........)))))....((((((((((((((((((((.........))))))))))))))))))))........ ( -47.40, z-score = -6.79, R) >droEre2.scaffold_4929 3653604 95 + 26641161 GCCGUCUCACAGGAUCGUCUUCUGGGCUAGAUGGUCAGGGAAUAAUUUCAAAUAGAGAAGUUUGG---------------AGCGCAGCC--------------AAUCGCAAUUAGUGAAGAUAC ...(((((((..((((((((........))))))))..((.....((((((((......))))))---------------)).....))--------------...........))).)))).. ( -22.80, z-score = -0.25, R) >consensus GAAGUACCACAGGAUCAUCUUCUGGACAAGAUGAUCAAGGAAUAAUUUGAAAUAGAAAACUUCGG_______________AGUGAAGCCA______CU_C_C_AGUCGCAGAUAGUGGAAAUAC ......((((..(((((((((......))))))))).............................................((((....................)))).....))))...... (-13.89 = -13.02 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:42 2011