| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,556,897 – 21,557,048 |
| Length | 151 |
| Max. P | 0.972864 |
| Location | 21,556,897 – 21,556,988 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 57.61 |
| Shannon entropy | 0.76686 |
| G+C content | 0.54939 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -9.54 |
| Energy contribution | -8.70 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21556897 91 - 23011544 GUAAACUCUUACCUACUUUAAAUGGUCGCCGUCCCGGCGGCCUCCUGCUUCUAUGUCGUCACCGCUCUUUGAGUUGGUGCGCCGAU-UAGCU ((((....))))...........((((((((...))))))))....(((....((.((.((((((((...))).))))))).))..-.))). ( -27.20, z-score = -2.35, R) >droEre2.scaffold_4929 23728884 90 - 26641161 GCUAACUCUUCCCUCCUUUAAAUGGUCGUCGUCCCGGCGGCCUCCUGCUUCUAUGCCGUCACCGCUCUUUGAGUUGGUGCGCCGAU-UAGC- (((((.((...............((((((((...))))))))............(.((.((((((((...))).))))))).))))-))))- ( -25.70, z-score = -1.91, R) >droYak2.chr2L_random 207091 84 - 4064425 GCUAACUUCUCCCCUUUUUAAGUGGUCGCCGUCCCGGUGACCUGCUAGCUCCACAUCAGUGCCAGUUUU---GUUCGCCUCCUGAC-C---- ((.(((..............(((((((((((...)))))))).)))((((.(((....)))..))))..---))).))........-.---- ( -19.20, z-score = -1.63, R) >droAna3.scaffold_13089 354259 91 + 978470 GUUAACUCCUCCCUCCUUUAAAUGGUCGUCGUCCCGAUGAUCCACUCGUUCUACAUCGUCGUCGGCCCUCGAUUUCCUGCGGCGAU-UGGCU (((((.................(((((((((...)))))).)))...........(((((((.((..........)).))))))))-)))). ( -20.50, z-score = -0.72, R) >droMoj3.scaffold_6680 977882 92 + 24764193 GUUAACUCCUCCUCGGGUAGGCUGAAACCCGUCCUCGGGUAGGCUGAAACCCGUCCUCGGGUUUCUCUUUGAUUAUUUUCGGCGGUAUAGUU ...((((...(((((((..((((...(((((....))))).))))((((((((....))))))))............))))).))...)))) ( -30.80, z-score = -1.46, R) >consensus GUUAACUCCUCCCUCCUUUAAAUGGUCGCCGUCCCGGCGACCUCCUACUUCUAUAUCGUCGCCGCUCUUUGAGUUCGUGCGCCGAU_UAGCU .......................((((((((...)))))))).................................................. ( -9.54 = -8.70 + -0.84)
| Location | 21,556,988 – 21,557,048 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 51.30 |
| Shannon entropy | 0.84701 |
| G+C content | 0.56798 |
| Mean single sequence MFE | -20.11 |
| Consensus MFE | -5.92 |
| Energy contribution | -7.28 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21556988 60 - 23011544 CGUGCGGGCCUUUCCGUCCGGUCUGCAACUUGGCAGUUUCGCAA--UAUCUUCGUUGAGCGU-- ..((((((((.........)))))))).((..((..........--.......))..))...-- ( -14.63, z-score = 0.43, R) >droSim1.chrU 6132277 60 + 15797150 CGUGCAGACCACCGGAUAUGGCCUGCAAUUCAGCAGUUUCACUC--CGUGAGAACUGCUUGU-- ..(((((.(((.......))).)))))....(((((((((((..--.))))).))))))...-- ( -20.30, z-score = -2.17, R) >droSec1.super_79 15330 60 - 133581 CGUGCAGGCCACCGGAUACAGCUUGCAAUUCGGCAGUCUGACUC--CGUGAGAACUGCUUGU-- ...((((..(.(((((..(((.((((......)))).)))..))--)).).)..))))....-- ( -19.60, z-score = -0.94, R) >droAna3.scaffold_13089 354350 60 + 978470 CGUGCGGGCCACCGGAUCCGGUGUGCAAUUUGGCAUUUUUCCUA--AAUUCUGCCAGCGCGU-- (((((..(((((((....))))).))....(((((.(((....)--))...)))))))))).-- ( -24.50, z-score = -2.33, R) >droMoj3.scaffold_6680 977974 61 + 24764193 ---GCGAUUCUUUCGCAACGGCAUCCGGUGCAAUUGCUCCAUCAGCAACUCCGGCCGUGCGCGU ---((((.....)))).(((((((((((.(...(((((.....)))))).))))..)))).))) ( -21.50, z-score = -1.49, R) >consensus CGUGCGGGCCACCGGAUACGGCCUGCAAUUCGGCAGUUUCACUA__AAUGAGAACUGCGCGU__ ..((((((((.........)))))))).....((((((..............))))))...... ( -5.92 = -7.28 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:41 2011