| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,456,376 – 21,456,451 |
| Length | 75 |
| Max. P | 0.612162 |
| Location | 21,456,376 – 21,456,451 |
|---|---|
| Length | 75 |
| Sequences | 15 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 69.79 |
| Shannon entropy | 0.71352 |
| G+C content | 0.47985 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -8.80 |
| Energy contribution | -8.37 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.91 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21456376 75 - 23011544 UAAAUUUUUAAUGGAAGCGUCCACCAUUUGCUGAGUUGGCGGAUGUGACGGCGUCGCAGAGGCUUUCUUUGCCUU .............(..((((((((.(((((((.....))))))))))..)))))..).(((((.......))))) ( -21.00, z-score = -0.46, R) >droSim1.chrU 3688132 75 + 15797150 UAAAUUUUUAAUAGAAACGUCCACCAUUUGCUGAGUUGGCGGAUGUGACGGCGUCGCAGUGGCUUUCUUAGCUUU .............................((((((..(((.(.((((((...)))))).).)))..))))))... ( -20.50, z-score = -1.18, R) >droSec1.super_91 63001 75 - 125313 UAAAUUUUUAAUAGAAGCGUCCACCAUUUGCUGAGUUGGCGGAUGUGACGGCGUCGCAGUGGCUUUCUUAGCCUU .............(..((((((((.(((((((.....))))))))))..)))))..)...((((.....)))).. ( -20.40, z-score = -0.60, R) >droYak2.chr2R_random 56460 75 + 67238 UAAAUUUUUAAUCGAAGCGUCCACCAUUUGCUGAGUUGGCGGAUGUGACGGCGCCGCAUUGGCUUUCUUUGCCUU .............(..((((((((.(((((((.....))))))))))..)))))..)...(((.......))).. ( -19.80, z-score = -0.28, R) >droEre2.scaffold_4845 19539557 75 + 22589142 UAAGUUUUUAAUGGAAGCGUCUACCAUUUGCUGAGUUGGCGGAUGUGACGGCGUCGCAGUGGCUUUCUUUGCCUU ...........((((.(((((...((((((((.....)))))))).))).)).)).))..(((.......))).. ( -19.10, z-score = 0.19, R) >droAna3.scaffold_12943 4854110 75 + 5039921 CAAAUUCUUUAUUGAAGCGUCUACCAUUUGUUGAGUUGGCGGAUGCGAUGGUGGUGCAGUGGUCUUCUUCGCAUU ....(((......)))(((.((((((((.((...(....)....))))))))))))).((((......))))... ( -17.10, z-score = 0.16, R) >dp4.Unknown_singleton_1517 4595 75 - 24252 CAAGCUCUUAAUCGAAGCGUCAACCAUUUGCUGAGUUGGGGGAUGCGAUGGUGGAGCUGUGGGCUUCUUUGCCUU ..((((((..((((..(((((..(((..........)))..)))))..))))))))))..((((......)))). ( -27.50, z-score = -2.01, R) >droPer1.super_0 3263659 75 - 11822988 CAAGCUCUUAAUCGAAGCGUCAACCAUUUGCUGAGUUGGGGGAUGCGAUGGUGGAGCUGUGGGCUUCUUUGCCUU ..((((((..((((..(((((..(((..........)))..)))))..))))))))))..((((......)))). ( -27.50, z-score = -2.01, R) >droWil1.scaffold_181036 115 75 - 110856 UAAGUUUUUAAUCGAAGCGUCUACCAUUUGUUGAGUUGGUGGAUGCGAUGGUGGAGCAGUUGAUUUUUUGGCCUU ...((((...((((..((((((((((..........))))))))))..)))).)))).((..(....)..))... ( -22.40, z-score = -2.71, R) >droVir3.scaffold_13047 1584159 72 - 19223366 CAAAUUUUUAAUCGAUGCAUCUACCAUUUGCUGAGUUGGUGGGUGCGAUGGCGGAGCUGCUGUUGACUUCUU--- ...........(((((((((((((((..........))))))))))...((((....)))))))))......--- ( -20.80, z-score = -1.61, R) >droMoj3.scaffold_6540 26884747 75 + 34148556 UAGAUUUUUUAUCGAUGCAUCCACCAUCUGCUGAGUUGGUGGGUGUGUUGGAGGGACCGCUGCUUUCUUUGCCUU (((...(((..(((((((((((((((.((....)).)))))))))))))))..)))...)))............. ( -24.30, z-score = -1.87, R) >droGri2.scaffold_14978 487001 75 - 1124632 CAAGUUUUUUAUCGAAGCAUCUACCAUUUGCUGAGUUGGCGGGUGUGAUGCUCCAGCUGUUGUCCUCUUUGCCUU .............(.((((((...((((((((.....)))))))).)))))).)..................... ( -16.50, z-score = 0.15, R) >anoGam1.chr2L 35971217 71 + 48795086 GAGUGCCUUGACGGCGGCCAGCAGCAUCUCGUUGACCGGAGGAUGUGCCGCUGGCUGCUUGGGCUUCUUGG---- (((.((((....((((((((((.((((.((.((.....)).)).)))).)))))))))).)))))))....---- ( -34.80, z-score = -2.49, R) >apiMel3.Group1 13592251 69 - 25854376 UAACUCCUUGAUAGCAGCGUUAACCAUCUCAGAGGUUGGAGGAUGAGAUGCCUUCUCACGUUGUGCCUU------ .............((((((((((((........))))))....(((((.....))))))))))).....------ ( -16.20, z-score = 0.02, R) >triCas2.chrUn_133 1306 75 + 22076 UAAACCCUUAAUAGCGUUAUUGACCAUCUCGGAAGUGGGAGGAUGAGAAGGUUUGGCUCUAGGAUUUUUUGCUUU .....(((....((.((((..((((.(((((............))))).)))))))).)))))............ ( -12.70, z-score = 1.54, R) >consensus UAAAUUUUUAAUCGAAGCGUCCACCAUUUGCUGAGUUGGCGGAUGUGAUGGCGGCGCAGUGGCUUUCUUUGCCUU ................((((((.(((.((....)).))).))))))............................. ( -8.80 = -8.37 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:23 2011