| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,002,342 – 2,002,445 |
| Length | 103 |
| Max. P | 0.999191 |
| Location | 2,002,342 – 2,002,445 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.77 |
| Shannon entropy | 0.33469 |
| G+C content | 0.39541 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.80 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.76 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.70 |
| SVM RNA-class probability | 0.999191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2002342 103 - 23011544 ----AAGACUCAAUUUAAACUGCAUAUAUGAUUAGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUUACCAGA----- ----.....(((((((.((.(((((...((((..((((((((((....))))))))))..))))(((.....)))))))).)).))))))).(((........))).----- ( -26.00, z-score = -3.99, R) >droSim1.chr2L 1970824 103 - 22036055 ----UAGACUCAAUUUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUACUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUCACCACA----- ----(((..(((((((.((.(((((((.((((..((((((((((....))))))))))..)))).)))........)))).)).))))))).)))............----- ( -27.00, z-score = -4.40, R) >droSec1.super_14 1949202 103 - 2068291 ----AAGACUCAAUUUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUCUGCACUUGAAAUUGACCUGAAACUUACCACA----- ----.....(((((((.((.(((((((.((((..((((((((((....))))))))))..)))).)))........)))).)).)))))))................----- ( -24.30, z-score = -4.05, R) >droYak2.chr2L 1987288 94 - 22324452 ----CUGACUCAAUUUAAGC-GCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCGAUCAAAGGAGUACUUCUG--------AUUGACCUCAAACUCACCACA----- ----.(((.((((((.(((.-.(..((.(((((.(((((((((......))))))))).))))).))..)..)))..)--------)))))..)))...........----- ( -26.40, z-score = -4.54, R) >droEre2.scaffold_4929 2048228 112 - 26641161 AUUCUCGACUCAAUUUAAGCAGCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCCAUCCAGCCAGUGGCCCAGUACCUGUGAUUGACCUGAAACUCACCAUGGAGUU ....(((..((((((...((((..(((..(((..(((((((((......)))))))))..)))..(((...)))..)))..))))))))))..)))(((((......))))) ( -26.50, z-score = -1.81, R) >consensus ____AAGACUCAAUUUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUCUGCACUUGAGAUUGACCUGAAACUCACCACA_____ .........(((((((.((.(((.....((((..(((((((((......)))))))))..))))(((.....)))..))).)).)))))))..................... (-19.23 = -19.80 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:49 2011