| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,394,171 – 21,394,227 |
| Length | 56 |
| Max. P | 0.929123 |
| Location | 21,394,171 – 21,394,227 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 92.86 |
| Shannon entropy | 0.09839 |
| G+C content | 0.46429 |
| Mean single sequence MFE | -9.97 |
| Consensus MFE | -10.19 |
| Energy contribution | -9.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.30 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.929123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21394171 56 - 23011544 UUAAUUUCAUCCAAAAGGAGCCAACAACUGCUUCGAUGAGCCCAACGAACGCAACG .........(((....))).........(((((((.((....)).)))).)))... ( -9.00, z-score = -1.54, R) >droSim1.chrU 8108742 56 - 15797150 UUAAUUUCAUCCUAAAGGAACCAAGAACUGCUUCGAUGGGUCCAACGAACGCAACG .........(((....))).........(((((((.((....)).)))).)))... ( -10.60, z-score = -1.27, R) >droSec1.super_113 58046 56 - 77858 UUAAUUUCAUCCUAAAGGAACCAACAACUGCUUCGAUGGGCCCAACGAGCGCAACG .........(((....))).........(((((((.((....)).)))).)))... ( -10.30, z-score = -1.08, R) >consensus UUAAUUUCAUCCUAAAGGAACCAACAACUGCUUCGAUGGGCCCAACGAACGCAACG .........(((....))).........(((((((.((....)).)))).)))... (-10.19 = -9.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:17 2011