| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,310,946 – 21,311,045 |
| Length | 99 |
| Max. P | 0.931717 |
| Location | 21,310,946 – 21,311,045 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.15 |
| Shannon entropy | 0.54724 |
| G+C content | 0.40791 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -13.43 |
| Energy contribution | -12.93 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21310946 99 + 23011544 GAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAAGCAGCACCUA-GGUGCCC-AA--ACA-CA-ACAAAAUGGAAACGUAUAAAAAUCAAAAGUGAGUAUACACC--------- ....((((....(((((.((....))...........((((...-.)))).)-))--)).-..-.....(((....)))...............)))).......--------- ( -22.40, z-score = -1.95, R) >droSim1.chr2L 20911555 99 + 22036055 GAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACCUA-GGUGCCC-AA--ACA-CA-ACAAAAUGGAAACGUAUAAAAAUCAAAAGUGAGUAUGCACC--------- (...((((....(((((.((....))...........((((...-.)))).)-))--)).-..-.....(((....)))...............))))...)...--------- ( -23.00, z-score = -1.87, R) >droSec1.super_18 1239944 99 + 1342155 GAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACCGA-GGUGCCC-AA--ACA-CA-ACAAAAUGGAAACGUAUAAAAAUCAAAAGUGAGUAUGCACC--------- (...((((....(((((.((....))...........((((...-.)))).)-))--)).-..-.....(((....)))...............))))...)...--------- ( -23.00, z-score = -1.81, R) >droYak2.chr2R 19670495 99 - 21139217 AAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACUUA-AGUGCCC-AA--CCA-CA-ACAAAAUGGAAACGUAUAAAAAUCAACCGUGAGUAUGCACC--------- ...(..(((((.((((..((....))..)))).....((((...-.))))..-..--...-..-.....)))))..)(((((....(((....))).)))))...--------- ( -21.20, z-score = -1.51, R) >droEre2.scaffold_4845 19401763 99 - 22589142 UAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACCUA-GGUGCCC-AA--ACA-CA-ACAAAAUGGAAACGUAUAAAAAUCAACCGUGAGUAUAAACC--------- ....((((....(((((.((....))...........((((...-.)))).)-))--)).-..-.....(((....)))...............)))).......--------- ( -22.40, z-score = -2.26, R) >droAna3.scaffold_12916 5262561 100 - 16180835 GAUGGCUCUAUAGUUUGCGUAUUAGCAACAACAACCAGCACCUA-GGUGCCCCAA--ACA-CACAAAAAAUGGAAACGUAUACAAAACUCCCGUGAGUAUUCGC---------- ((..((((...(((((..((((...............((((...-.)))).....--...-........(((....))))))).))))).....))))..))..---------- ( -19.00, z-score = -0.53, R) >dp4.chr4_group4 3448643 100 + 6586962 AAUGGCUUUAUAGUUUGUGCGCAAGCAACAACAACAAGCACCUA-GGUGCCUCAAC-ACA-AGAACAACAUGGAAACGUAUAAAAAGCAAGCGUAAGUGCGCC----------- ....(((((...((((.(((....)))..........((((...-.))))......-...-.))))...(((....)))....)))))..((((....)))).----------- ( -26.00, z-score = -1.32, R) >droPer1.super_10 2477890 100 + 3432795 AAUGGCUUUAUAGUUUGUGCGCAAGCAACAACAACAAGCACCUA-GGUGCCUCAAC-ACA-AGAACAACAUGGAAACGUAUAAAAAGCAAGCGUAAGUGCGCC----------- ....(((((...((((.(((....)))..........((((...-.))))......-...-.))))...(((....)))....)))))..((((....)))).----------- ( -26.00, z-score = -1.32, R) >droWil1.scaffold_181071 806023 101 + 1211509 AAUGGAUUUAUAGUUUGUGCGCAAGCAACAAAACACCGCACUUA-GGUGCCCAAAC-ACAACAAUUAAAAUGGAAUCGUAUACACUAAAACGGUAAGUACUUU----------- ....(((((...((((.(((....)))...))))...((((...-.))))......-...............)))))((((..(((.....)))..))))...----------- ( -20.10, z-score = -1.04, R) >droVir3.scaffold_12723 235559 107 - 5802038 AAUGGCUUUAUAGUUUGCGCGCAAACAA-AACA-CAAGCACGAACAGUGCCCCAAC-ACACAA--AGUUAUGAAAAUGUUAACAAAAAUAUUGUAAGUACC--AAUAUUGAACA .((((((((...(((((....)))))..-....-...((((.....))))......-....))--)))))).....((((......(((((((.......)--)))))).)))) ( -19.10, z-score = -0.85, R) >droMoj3.scaffold_6500 21203265 109 - 32352404 AAUGGCUUUCUAGUUUGCGCGCAAACAA-AACA-CAAGCACGAAUAGUGCCCACAA-ACACAA--AGUUAUGAAAAUGUUAACAAAAUACCUGUAAGUACUUAAACAUUGAACC .((((((((...(((((....)))))..-....-...((((.....))))......-....))--))))))...((((((....((.(((......))).)).))))))..... ( -16.20, z-score = 0.21, R) >droGri2.scaffold_15126 6079104 99 - 8399593 AAUGGCUUUCUAGAUUGCGCGCAAGCAA-AGCAACAAGCACGA-CAGUGCCCAAAACACACAACAAAUUAUGAAAAUGUUAACAAAAACAAUGUGAGUACC------------- ..(((.........((((((....))..-.))))...((((..-..)))))))..((.((((.((.....))....((((......)))).)))).))...------------- ( -17.90, z-score = -0.43, R) >consensus AAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACCUA_GGUGCCC_AA__ACA_CA_ACAAAAUGGAAACGUAUAAAAAACAACCGUGAGUACGCAC__________ .(((..(((((.(((((....)))))...........((((.....))))...................)))))..)))................................... (-13.43 = -12.93 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:12 2011