| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,307,580 – 21,307,654 |
| Length | 74 |
| Max. P | 0.824326 |
| Location | 21,307,580 – 21,307,654 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 60.77 |
| Shannon entropy | 0.67750 |
| G+C content | 0.45393 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -3.15 |
| Energy contribution | -7.60 |
| Covariance contribution | 4.45 |
| Combinations/Pair | 1.45 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.13 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21307580 74 - 23011544 UGUUGUUUUUCACUAAGUGACUAAG-UGCU--CUAGGAGAGUGUGCGUUCUCCUGGAUGCGCUUUAGCG-ACUACAAU .((((((..((((...))))..(((-((((--(((((((((......)))))))))).)))))).))))-))...... ( -27.40, z-score = -3.43, R) >droSim1.chr2L 20907943 76 - 22036055 UGUUGUUUUAAGUGAUGUGGUGGUGCCACUUACCAGGAGAGUGUGCGAUCUCCUGG-UGCGCUUUAGCG-AUUACAAU .((((((..(((((..((((.....)))).((((((((((........))))))))-))))))).))))-))...... ( -29.90, z-score = -3.91, R) >droSec1.super_18 1236795 76 - 1342155 UGUUGUUUUAAGUGAUGUGGUGGUGCCACUUACCAGGAGAGUGUGCGAUCUCCUGG-UGCGCUUUAGCG-AUUUCAAU .((((((..(((((..((((.....)))).((((((((((........))))))))-))))))).))))-))...... ( -29.90, z-score = -4.04, R) >droEre2.scaffold_4845 19398052 67 + 22589142 AGUUGUUGUUCCCUAUGGACGGACGGAAU---UCCACAUAGUG--------ACUAAGUGCGCUUUGGGGAAUUACAAU .(((((.((((((((.((.((.((((...---.))...(((..--------.))).)).)))).)))))))).))))) ( -22.10, z-score = -2.75, R) >droYak2.chr2R 19667163 56 + 21139217 UGUUGUUUUUCGCUGUGGAAGGCAG-------------UAGUG--------ACUAAGUGCGUUUUGGGG-AUUACAAA ...((((((((.....))))))))(-------------((((.--------.(((((.....)))))..-)))))... ( -13.40, z-score = -1.36, R) >consensus UGUUGUUUUUCGCUAUGUGAGGAAG_CACU__CCAGGAGAGUGUGCG_UCUCCUGG_UGCGCUUUAGCG_AUUACAAU .(((((....(((((.((((.....))))...((((((((........))))))))........)))))....))))) ( -3.15 = -7.60 + 4.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:11 2011