| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,270,357 – 21,270,486 |
| Length | 129 |
| Max. P | 0.790382 |
| Location | 21,270,357 – 21,270,486 |
|---|---|
| Length | 129 |
| Sequences | 5 |
| Columns | 129 |
| Reading direction | reverse |
| Mean pairwise identity | 57.05 |
| Shannon entropy | 0.79714 |
| G+C content | 0.49145 |
| Mean single sequence MFE | -42.20 |
| Consensus MFE | -11.04 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21270357 129 - 23011544 UUGCCCCCAAGGGGGUGUCCUCUCGCCACUCCUGUGGAGCUUGCUGGUAGACGAGUUGCUGGAGAGACUGACCCGCAGGGGUAUACUUUGCCAAGGCUAUGCUGACGAUAUUGUCAUUAUAGCUAGAGG ..(((((....)))))..(((((....((((((((((((((..(..((((.....))))..)..)).))...))))))))))............(((((((.(((((....))))).)))))))))))) ( -52.30, z-score = -2.16, R) >dp4.chr2 18174670 125 - 30794189 ----CCUCAGGGUGGAGUCCUGUCGCCACUACUGUGGAAUCUGGUGGUCGACGACCCCAUCAAGAGAUUUAAAAGGAUGCCUCCCAAGAUAACAGCUUAUGCAGAUGACAUAGGCAUACUUAUUACGGG ----((...(((.((.((((((((.((((....))))....(((.((((...)))))))......))).....))))).)).))).........((((((((....).)))))))...........)). ( -38.70, z-score = -1.20, R) >droPer1.super_278 18650 129 - 27293 CACACCUCAGGGUGGAGUCCUGUCGCCACUACUGUGGAAUCUGGUGGUCGACGACCUCAUCAAGAGAUUUGAAAGGAAGGCCCCAAAGAUAACAGCUUAUGCAGAUGAAAUAAGCAUACUUAUUACGGG .....(((..((((..(((..((((((((((..........)))))).)))))))..))))..)))...............(((...(((((..((((((.........))))))....)))))..))) ( -33.50, z-score = -0.05, R) >droWil1.scaffold_180026 1262 129 - 3204 AUGCCCCCAAGGGGGAGUCUUGUCACCACUUUUGUGGAAUCUCGUAGCAGAUACGCUAUUGAGGCAACUCAAUAAUUGCGGUUUUCCAACUUAUGGAUUUGCCGACGACUAUCUAGCUCUGAUAGUUGG ...((((....))))..........((((....)))).....((((.....)))).(((((((....)))))))....((((..((((.....))))...)))).((((((((.......)))))))). ( -45.00, z-score = -3.41, R) >triCas2.chrUn_85 51315 129 - 151068 UAGCCCUCAGGGGCGAAUUCUCUCUCCACUCUUGUGAGACCUUAUGGUGGACGAUUUCAUUCGCAAGCUAAAUGUGCUUGGUGUGUAUUGUUAGGGCUAUGUCGAUGACAUAGUCAUCCUGAUGCAAUG ..((..((((((((((((....(((((.(((....)))(((....)))))).))....))))))...((((..((((.......))))..))))(((((((((...))))))))).)))))).)).... ( -41.50, z-score = -1.89, R) >consensus UAGCCCUCAGGGGGGAGUCCUGUCGCCACUACUGUGGAAUCUGGUGGUAGACGACCUCAUCAAGAGACUUAAAAGGAGGGGUCUAAAGAGAAAAGGCUAUGCAGAUGACAUAGUCAUACUGAUUACAGG ...(((....))).....(((((..((((....)))).........................................................(((((((.......))))))).........))))) (-11.04 = -11.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:07 2011