| Sequence ID | dm3.chr2L |
|---|---|
| Location | 212,102 – 212,196 |
| Length | 94 |
| Max. P | 0.604851 |
| Location | 212,102 – 212,196 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 78.46 |
| Shannon entropy | 0.43082 |
| G+C content | 0.57359 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -19.15 |
| Energy contribution | -19.91 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 212102 94 + 23011544 CUUCUCCUCUACGCGAUUUU---CUCCGGCCCUUAGUAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((....---....(((((.......)))))((((...((((..((((....))))))))...)))).........)))).... ( -27.30, z-score = -1.49, R) >droGri2.scaffold_15252 12896396 76 + 17193109 -------CUUGUCUGGUUCU-----GGCGCCCACCACUGGGGCGCUAUCGUCUAGCUAGGA--GGAGCUUGGCUUU-------ACUCAUUCAUUCCG -------.......((...(-----(((((((.......))))))))..((..(((((((.--....)))))))..-------)).........)). ( -24.80, z-score = -0.99, R) >droSim1.chr2L 216234 94 + 22036055 CUUCUUCUCUACGCGAUUUU---CUCCGGCCCUUAGGAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((....---....(((((.......)))))((((...((((..((((....))))))))...)))).........)))).... ( -27.30, z-score = -0.90, R) >droSec1.super_14 210160 94 + 2068291 CUUCUUCUCUACGCGACUUU---CUCCGGCCCUUAGGAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((....---....(((((.......)))))((((...((((..((((....))))))))...)))).........)))).... ( -27.20, z-score = -0.84, R) >droYak2.chr2L 204524 94 + 22324452 CUCCUCCUCUACGUGAUUUU---CUCCGGCCCUUAGGAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((....---....(((((.......)))))((((...((((..((((....))))))))...)))).....))))........ ( -25.80, z-score = -0.42, R) >droEre2.scaffold_4929 257648 94 + 26641161 CUCCUCCUCUACGCGAUUUU---CUCCGGCCCUUAGGAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((....---....(((((.......)))))((((...((((..((((....))))))))...)))).........)))).... ( -27.30, z-score = -0.64, R) >droAna3.scaffold_12943 857944 97 - 5039921 CUCCUCCUGGUCCAGAUCCUAACUUCCGGCCUUUCGGAGGAGCCGCGUCAUCCUGCUAGCGCUGUCGCUCGGAUCUGCGCAAUACUCAUUCAUUCCG (((((((.((.((.((........)).))))....)))))))..((((.((((....((((....)))).))))..))))................. ( -29.30, z-score = -1.47, R) >consensus CUCCUCCUCUACGCGAUUUU___CUCCGGCCCUUAGGAUGGGCCGUGUCAUUCUGCUAGCGCUGGCGCUCGGAUCUGCGCAAUACUCAUUCGUUCCG ............((((...........(((((.......)))))((((...((((..((((....))))))))...)))).........)))).... (-19.15 = -19.91 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:16 2011