| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,231,786 – 21,231,844 |
| Length | 58 |
| Max. P | 0.825308 |
| Location | 21,231,786 – 21,231,844 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 93.10 |
| Shannon entropy | 0.09500 |
| G+C content | 0.29310 |
| Mean single sequence MFE | -9.57 |
| Consensus MFE | -8.65 |
| Energy contribution | -9.10 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21231786 58 - 23011544 UUGUAACCAAUGCUAACCUUUGUUGGGCGCUGUUAAAAAUCUAUCCUCUUUUAAUUAA ..((..((((((........))))))..)).(((((((..........)))))))... ( -5.70, z-score = -0.11, R) >droSec1.super_18 1156322 58 - 1342155 UUUUAACCAAUGAUAACCUUCGUUGGGCGCUGUUAAAAAUGUAUUCUUUUUUAAUUAA ......(((((((......))))))).....((((((((........))))))))... ( -11.50, z-score = -2.61, R) >droSim1.chr2L 20816183 58 - 22036055 UUUUAACCAAUGAUAACCUUCGUUGGGCGCUGUUAAAAAUGUAUUCUUUUUUAAUUAA ......(((((((......))))))).....((((((((........))))))))... ( -11.50, z-score = -2.61, R) >consensus UUUUAACCAAUGAUAACCUUCGUUGGGCGCUGUUAAAAAUGUAUUCUUUUUUAAUUAA ......(((((((......))))))).....((((((((........))))))))... ( -8.65 = -9.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:05 2011