| Sequence ID | dm3.chr2L |
|---|---|
| Location | 21,227,811 – 21,227,901 |
| Length | 90 |
| Max. P | 0.517621 |
| Location | 21,227,811 – 21,227,901 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 66.00 |
| Shannon entropy | 0.69518 |
| G+C content | 0.47877 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -5.85 |
| Energy contribution | -5.93 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 2.15 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 21227811 90 + 23011544 ---AAGAAAGACGAUUCUGACUAUACAGA-----AACGGAAACGGAAGAUGACGAU--GAUAAUG--------AGUUGUCCGAUA---ACGUGGACAGCGCCGAUUUGUGU ---.......(((((((((......))))-----).(((...(....)........--.......--------.((((((((...---...)))))))).)))..)))).. ( -21.50, z-score = -2.28, R) >droSec1.super_18 1152365 90 + 1342155 ---AAGAAAGACGAUUCUGACUAUACAGA-----AACGGAAACGGAAGAUGACGAU--GAUAAUG--------AGUUGUCCGAUA---ACGUGGACAGCGCCGAUUUGUGU ---.......(((((((((......))))-----).(((...(....)........--.......--------.((((((((...---...)))))))).)))..)))).. ( -21.50, z-score = -2.28, R) >droSim1.chr2L 20812216 90 + 22036055 ---AAGAAAGACGAUUCUGACUAUACAGA-----AACGGAAACGGAAGAUGACGAU--GAUAAUG--------AGUUGUCCGAUA---ACGUGGACAGCGCCGAUUUGUGU ---.......(((((((((......))))-----).(((...(....)........--.......--------.((((((((...---...)))))))).)))..)))).. ( -21.50, z-score = -2.28, R) >droEre2.scaffold_4845 19317824 90 - 22589142 ---AAGAAGGAUGAUUCUGAAUAUACAGA-----GACGGAAACGGAAGAUGACGAC--GAUAAUG--------AAUUGUCCGAUA---ACGUGGACAGCGCCGAUUUGUGU ---.((((......))))....(((((((-----..(((...(....)........--.......--------..(((((((...---...)))))))..))).))))))) ( -18.90, z-score = -1.46, R) >droYak2.chr2R 19591875 90 - 21139217 ---AAAAAGGACGAUUCUGAAUAUACAGA-----AACGGAAACGGAAGAUGACGAC--GAUAAUG--------AGUUGUCCGAUA---ACGUAGACAGCGCCGAUUUGUGU ---.....((.((.(((((......))))-----).((....))......((((((--.......--------.)))))).....---..........))))......... ( -18.20, z-score = -1.12, R) >droAna3.scaffold_12916 5200731 93 - 16180835 ---AAGAAGGAGGACUCUGACUACACGGA-----GACUGAAACGGAGGACGACG-----AAAACGGG--UCGGAGCUCUCCGAGA---ACAUGGACAGUGCUGACUUGUGC ---.....(..(..(((((....((.(..-----..)))...)))))..)..).-----...(((((--((((.(((.((((...---...)))).))).))))))))).. ( -29.80, z-score = -2.29, R) >droWil1.scaffold_180703 1595742 96 - 3946847 ---AAGAAGGAGGACUCGGACUAUACGGA-----AACCGAGACUGAGGAUGACGAU--GACAAUGGA--UCGGAACUAUCUGAAA---AUAUGGAUAGUGCCGAUCUCUGU ---.....(..(..(((((.((....(..-----..)..)).)))))..)..)...--.(((..(((--((((.(((((((....---....))))))).))))))).))) ( -29.80, z-score = -3.92, R) >droVir3.scaffold_12963 16742867 99 - 20206255 AAAAAGAAAGAGGAUUCCGACUAUACGGA-----AACGGAAACCGACGACGAUGAU--GACAACGGU--UCCGAGUUGUCGGAGA---ACAUGGACAGCGCUGAUCUGUGC ...........(..(((((((.((.((((-----(.(((...)))....((.((..--..)).)).)--)))).)).))))))).---.).......((((......)))) ( -25.60, z-score = -1.22, R) >droMoj3.scaffold_6500 18514981 93 - 32352404 ---AAGAAAGAGGAUUCCGAUUAUACGGA-----AACCGAAACGGACGACGAUG-----ACAACGGG--UCGGAGCUGUCGGAGA---ACAUGGACAGUGCGGAUCUGUGC ---........((.(((((......))))-----).))....((.....))...-----...(((((--((.(.((((((.(...---...).)))))).).))))))).. ( -28.10, z-score = -2.15, R) >droGri2.scaffold_15252 14172023 93 - 17193109 ---AAGAAAGUCGAUUCAGACUAUACGGA-----AACCGAGACGGAG---GACGAC--GACAACGGC--UCGGAGCUGUCAGAAA---AUAUGGAUAGCGCUGAUCUGUGC ---.....((((......)))).((((((-----..(((((.((..(---......--..)..)).)--)))).((((((.....---.....)))))).....)))))). ( -27.40, z-score = -2.06, R) >anoGam1.chr2R 58619055 108 - 62725911 ---AACUCGGACGACUCGGACGAGGUGGAGGAGGAGCUGCGACGUGCGAAGGCGAAAAAGUCGCGCAAAAACCGGGUGCUGGAUGACAGCGACGAGGAGCUAGAUUUGGAC ---..((((..((...))..)))).(.(((....(((((((((.(((....))).....))))).......((..((((((.....)))).))..))))))...))).).. ( -35.20, z-score = -1.63, R) >triCas2.chrUn_32 168805 95 - 233905 --------AAACGA-UCGAUUUGGGAAGA-----AUCCGAAUCGGAAGAAAGCGAUC-GAUCGUGGGG-UCGAAGACGUAAGAAACCGGCGAAGAAAACUACAACUUCUUC --------..((((-((((((..(((...-----.)))...((....))....))))-))))))...(-(((....(....)....))))((((((.........)))))) ( -25.70, z-score = -0.84, R) >consensus ___AAGAAAGACGAUUCUGACUAUACAGA_____AACGGAAACGGAAGAUGACGAU__GAUAAUGG___UC__AGUUGUCCGAUA___ACGUGGACAGCGCCGAUUUGUGC ...........((.(((((.................))))).))..............................((((((.............))))))............ ( -5.85 = -5.93 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:56:04 2011